RnoINT0044833 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15052638-15056903:+
Coord C1 exon
chr3:15052638-15052831
Coord A exon
chr3:15052832-15056815
Coord C2 exon
chr3:15056816-15056903
Length
3984 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACTCTGTCTCTGCTCACAGGTT
3' ss Score
10.98
Exon sequences
Seq C1 exon
GATCTGGCGGTGCTGCAAGACAAGCTGCGGATCTCCACCAAGAAGCTGGAGGAGTACGAGACCCTGTTCAAGTGCCAGGAGGAGACGACGCAGAAGCTGGTGCTCGAGTACCAGGCTCGGCTGGAGGAGGGCGAGGAGCGGCTGCGGCGGCAGCAGGAAGACAAGGACGTCCAGATGAAGGGCATCATCAGCAG
Seq A exon
GTGAGCAGGCCGCCCATGGGCCACGGCCTCCGGCTGTGGGACGGTGGGCACCGGGAAGAAGCTGGCCGTCCGCTGAGCTCTAGGGCAATTAGAGATCTAAGCCAGACAACGAGGAAGCCATTGAAGGCAGGGAGAAGGACAGCGTATCTGGGTGTGTGTTCAGGTGTCCATTGTGGATAGGGAGGAGTTTGGTTCGAAAAGAGAAGTGACTATGCCAATATGGTAGATGGGGGTCTATTGGGTTTCCAGTGTCTGGTTTGTTTGAAGAGTTTCTGAGGTCAGTTGCTTCTGGTAGCTAGCTCTCTCCTCTCTCTCTCTGCCTGGGATGGGATGGGCGTGCTGTCCTTGGTGTCTGCACACAGGCAGTGCAGTATCTCGGCCACCCACTGTGTCCCAGGCCTGGAGCATCTACCTCACAGCAGTGTGTAAGGAATTGGGTTGAGCATGGTCATTGGCTGAGACCTGGGACTGAGCAGGCATGAGGTAGACAGGGAACTCCCCCTTAGCCTTCTGTCTTGTCCACAGCACAAGCCCTTTCCAGATCACCTGATCTGCCCGCCTGGCGGTTGTTTCCTGTCCTGGGCTTCTGTTCATTACAGATCATTAGCAGAGCACAACCCAGGTGGCCGGACCCCTGCGAACTGCTTGACATCCCACTCTGTTCTTGGCTCCCCTGGTGCCCAGCCATCTCCCCGTCCTGTGTCTGAGAGTGTAGACAGCATGAGGACAGTTAGGTCTAACTCGTCCTTGCTGCTCCTTTGCCTGCCTGCTTGTCTTACTCTGTCCGCTTCTGAGAATGCTGTGCGGAGCTCTCTAATCAGGACTCTCCTGGTTCCTTTCTGTTGGGTTTTGCTTCACTGACACTTTGTAGTCCTGAGTGGGCGTCCTTTTAGGATGATTATGTACCACTAACAAACCGGCCTTTTAATTATACCCTCTCCTCCATCTTGCTCTAATGTAGACACTCTTAACTTTCTCTGACTGGGGTTAGCGCGGTCTATCACTTTCTGCCCTAGACACTTTTAGACCATTGTTTGGTCCATTTCCACTTCCATGACAAAATATCAGCACTCGATCATTATAAACTAGAGAAACGTACTGCTCACAGTTCTGCCGTGTCAGCAGTTTAGTGTAGCTCTCCCTCATAGATATACCTTGGTGCTGTGTCCTTAGAGGCAAGCTCCTTCCAGCTTCTTTGGAAAGAACACTAACCCTGCTCATGAAGACAGAAATATCATGTGACCCAGTCACTTCCCAGAGCACAGCTGGTAACACCGCAGAGGTTAAGTTTCAGGGTCTGCACATTTGAGTGTGGACACAAACTTTCAGACTGAAGTACCCGTCTCTGTGCACAAAGTTTATTTTATAGGTTCCGATAGATAGATCTGTTTATTGTCTAACAACTTACGCCTTTTAATTGGAGCGTTTAAGCCATTTACTTCTTTTTCTTTTTTTCTTTTTTCTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTCGCTAGGCAAGCGCTCTACCACTGAGCTAGATCCCCAACCCCAAGCCATTTACTTCTAATGTGATGGTCTTAAGCCTGTCAACCTTGTAGCTGTTCCCTGATGGTATGTAGCACTAGCGTCTTTCTGACTTCTTGCCTTCCTTGGACCGTGTCTTTTATTCCATAGCATCTCTCTGTTGGCTTCCATTGCTGTCTAGCCCCGGTGGCTTCGGGTGTTCGTTGACAGGTCTTCCTCAAAGGACAGTGACAATCGTGTCAGGCTTTGCAGACTACGTGACCTACTGCTCCATCTTACCTGCCGTCACAGCCGTGCGATATGAAGCCTTACAGAAGGAGGCAGAGGCAGAGGCGGTGGCTTGATGTGACCCTCCTCTGGCTACAGAGGCAGGGGCATTGCCCTGTCTGGGCTTTGTTTTTATTTTGTTTTGTTTACGTAGTCAGCTCTTTCTCACAAGGTTTTAAAGAAGCCTCTCCTGGGCTAGAGCTGTGTTCATTGTTGGAATGTCTGCCTGACGTGCACAGTCCCTAGGTTGGCTCCATAATACTAAAAATTTTCTAATTTTATGTATGACTGGGGAGGGGCTTGTATGTATATGTGTGCAGGGCTAGGTGTGTAGGTATTTAGGCCATAGAACAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTGTATGCTTATGTAGGGATATGTGGGTGTGTAGGTTAGAGGACAGTGTCGGAGGCTTCTCTTCCCCGTGGGTTCTGGGGAAGATTAACCTCGGGTCCCTAAGCTTATGCCGCAGTGCCCCTGCTCACTGGGCCATCTGATCTTCCTAATGATTTTTTCATTCAATGTTGTCAACAATTTCATTTTTCAGTTTGACTCTTACGTGCCTGGTGTGGTTTTCTTTGTGTTTCTTGGGTTGACTAAACTTAGGTATGTAGGTATGTGACTCTGCTTCCTACTTCTTCCTCTGTGGCTCCTGTCACCTGCCCCAGGTATAGTAGGCTGCTCTATACTGTCTTCCATTTCGTTCTTTACTTTTTTCCTTCTTTCTCCCTTTTATTTGATTTTATTTTATATGTATGGGGGGTTTCCCTGCATGCAAGTCTGTGTCAGATCTCCTGAGCTGGAGTTCCAGGTGCTTGTGAGCTGCTGGGTGGATGCTGGGAATTGAGTTCAGGTCCTTTGTAAGAGCAGCAGGTATTCATAACCACGGAGCCGTCTGTTAACACACACACACACACACACACACACACAGTCGTTTTCACAGTTCTTTGAGTTTTGTTTTGTATACATTTTTATATTACTGGGTGAGGATTGAACCCAGGGCCTTGGGCAGTTTAGATAGTTCTCTGTCACCGAGTTACACCCCAACCTTTGTACTTAAGACAGTCTCTTAGTAAATTTCCTAAGCTCTCCCTGGACTTGCCCACAGCCCAAAAGGTCTTGAACTTGCAGTGGTCCTCCTGCATCAGTCTCCCAGGTAGCTGGGGTTACAGGCCTCTGTGTAGGCGTGGCTCACATGTCATCTGAAATGGCACACCAGTGTTTTGCAGTACCTACAGTTGGTCCTTTCTCCTGCAAGTCTTTAGAGTTTCGCTGTGATTTAAAGCTCTTTGATTTTCCTCATGCTTACGACTGTCTCTTTGGCGAGTAGACTGCCCTATGGTTACTGCCTCACAGCATCACCTCCTGCCGCCCTTACCTGGCATCTCCGTCTCTTCTCACTAGTTTTTCTCCTGGTTGTTTCCTTACATCTCTGTGTCCTTGGCAGCTTTGGTGGGATGCCAGGCATTTTGGAGCTTTGCTAGGGTGGGACCTGAAGACCTTCAGACTTGGTCTCGGTCTCGTCTGGCTGTTCCATGGTGCAGGTACCTTCTCAGAATTCTTCATGGCCCCATATGGCCCATCTTCCCCTGCATCTATCTAGCTTATGGGATGTTCCCAGCTTGCTGGGGTTTTGCCAGGCAGAATTAGGATTCCTACAGAGACTAGAGGGGAATGTTTAGTAGGGTCTGTTTCTGCCTGGCGCTCCTAAAGTTCCTCCATCTCGTCCCTCCTGAGCTCCCTCATCACTCGGATGCCAGTGCCCACCACAGCAGCTGTACAGACTTTCCTTATAGGCTAGTGTGATGTTACTGGCGTCCCTGAACCTCGGGCCTTCATAATACCCACACCACCTTGGTGAACATGGTAGGAGGGGTCTATCTAGAGCCTTTTCTAGTGTCTTCATCATATCCCCTGCCACAGATCCTATAACATGGCATCTCTGGGTCTTGGAATGGAGATGCATTGGAATGGAGATGGCCCCAGAGAGCAGAGCTGCACGTGGGGAGTTGAGGTCAAATCAGAGTGGTCCAGCCATGTCCATGCTGGGGACAGTTGAAGGGCCTCCGCTGTTGCCTAGTGTGTCCTTCTATAGCTTAGGACGTTTTCCTCCTCTGTGCATGGTGACTCTGTCTCTGCTCACAG
Seq C2 exon
GTTGATGTCTGTGGAGGAGGAACTGAAGAAGGATCACGCTGAGATGCAAGCGGCCGTAGACTCCAAACAGAAGATCATCGATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.458
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(12.5=100)
A:
NA
C2:
PF120043=DUF3498=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]