GgaINT0124837 @ galGal4
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8605670-8606650:+
Coord C1 exon
chr17:8605670-8605863
Coord A exon
chr17:8605864-8606562
Coord C2 exon
chr17:8606563-8606650
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CTTGTCTGTCTGGCTACCAGGCT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GACCTGGTGGTGCTGCAGGACAAGTTGCGCATCTCCAACAAGAAGCTGGAGGAGTATGAGACACGCTTCAAGTGCCAGGAGGAGACAACGCAGAAACTGATGCTGGAGTACCAGGCCAGGCTGGAGGAGAGCGAGGAGCGGCTGCGGAGACAGCAGGAGGATAAGGAGATCCAGATGAAGGGCATCATCAGCAG
Seq A exon
GTACAGGGCAGCTGGGGGAGGCAGCAGGGCTGGCATTAGTGCTGACCACGCAGTTCAGTCCTGCTAGTTTCACCTTACCCGAGCTGAGCCACGTCTCTGCTTTTAATCAGCATTCACAAAGGAGTCTTCCTTCCCTGGCCTTAATCACTTAAGCTCTTGGGCAATGTGCTCTAGGGTTGTCTAGACAAAATTAACAGCCAGAAAAATGATGTGTTGAACCATTGGTTTGTAACAGCAGGTGGTGGCAATGCCCATGTCCCTTTTCTGTTTGAACACACAGCTGCTTGTTGTGGGAGCATCTCAGTGTGCCTCAGTGTTGCACGCTCAGCTGAGGGCTCAGACCTCATCTGGATGGCAGAGGCTGCAGACCAGGTCTCTGCCATTTCACACCTCCTCCTACATGTTGCAGAGGTGCTTATCAGCCTCTCCTTCCTCAGTGTTGAGGAAGCATCCAACTAAAAATGTTCCTGCCCTTTCCTTGAGGGCCTTTAGAGTACTTTTTGTTCTTCTCATAAAGCATGCTTTTCACAAAGCCAGCCTGTTGCACAGGGAGACAGGAGCTGCAGGCCTGCAGGGTCCCCTTTCTCCAGCTGCCCCCAGCTCTCGGATCACTTCCCTAAGCAGTACAAACCACTGCAAAGATGATGCACTCTGCATCTTGAAAACATGTTCATATTTTCTTGTCTGTCTGGCTACCAG
Seq C2 exon
GCTGATGTCAGTTGAGGAGGAGCTGAAGAAAGACCATGCAGAAATGCAGGCTGCCGTGGACTCCAAACAGAAGATCATTGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(12.5=100)
A:
NA
C2:
PF120043=DUF3498=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGCTGCAGGACAA
R:
TGTGCATCAATGATCTTCTGTTTGG
Band lengths:
278-977
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]