RnoINT0124501 @ rn6
Intron Retention
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74777639-74779246:-
Coord C1 exon
chr13:74779044-74779246
Coord A exon
chr13:74777727-74779043
Coord C2 exon
chr13:74777639-74777726
Length
1317 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TTCTTCCCACCACACTCTAGGCT
3' ss Score
6.18
Exon sequences
Seq C1 exon
TATGAACAAGAAATTAGCAAACTGAAGGAGCGTCTGCGGGTGTCCAGCCGGCGGCTGGAGGAGTATGAGCGCCGGCTACTGGTTCAGGAGCAGCAGATGCAGAAGCTGCTGCTGGAGTACAAGGCCCGGCTGGAGGACAGTGAGGAGCGGCTGCGCAGACAGCAGGAGGAGAAGGACAGCCAGATGAAAAGCATCATCAGCAG
Seq A exon
GTTAGAAGACCACCTGCTATCTGGTTACCTCTAGTTAGCTACGAAGAAGTAGGGAAATGTTCCAGATACTCTCAAAAGAATACTTGGAAAAATTTTCATCCATGTCTATAAATATATTTTGTAGTACTCAATACAGATGTAATGACTGTGTCTCTCAGGTATAAACCAAATGAGATCTGGGTTACTTCCTATGAAGGTAAAGTAGGGCCTTTTTTCTTTAACCATAACAGTATTGGAGGGGGAAAAGGAAGGGGAAACTAAGAAGTTACTTTGAAGTTTTAGATGAAGATTGGGTTTTCAAGATCTATAATATCTAAGATTTAACTCCAAAAACGAAGAAGTCTCACTGGATGTCTTTAGGGCCAGATAACCAAAAAGCACCATAGATGCCCAAAAAGGAAAATAAAGAAGCCCACCTAGCTGCACTTGGAGAGCACTTACTGTGGACCAAGTGCTTTTCTAATCACTTTGTAAACAGTGCTTTGTCTTCAACTGGTCTCTGAACCAGATGTCATTATCACTCCTATAGGATAGAAGAATTGTCAATACTTGCATGCCCAAGGTAACATAGTCAGTGGAGACCTAGGATTTGAGCCATCAGACTTCAGACTCGTAACCACTAGCTTTTATATTACCACATGCTGTGGACAAAGAGACATAAAAAGAGTTGCTATCCAAGTAGCCTGGAAATGAGTGACCTCATACTGAGAGCCATGAGAGTAGAACTGAGGAAGTCTGCATACGTGGACTGAGATGCGAGGAGGAAATGAGAAACAAGATCTACTGGAATGCCCTGTAGGAAACATCAAGGGAGGGGGGAGACAGGATGGTAACTACAGTATAACTCGAGAGGAAGAGTACATGGTTTGCAACGAGGCATGGTGGTGCTTACCCATACTAACGTAAACATTCAGGAGGTAGAGATAGGAGTACCTGGAGGTTAAAGCCAGCATCAGCTTCATAGCAAGATTAAGGCTGGTCTAAGCTATATGAGACACTCTCTCAATAATAAATACTTTAGAAAGTAGACAGCCTTTTTGTTTTGTTGGTTTTATTTGCTATTTTAAGATGTTTGCTAACAGGGTGATTACTAGAATAATCTTCTGAAGGAAATGAAATATTATGGACCCAGCCACAGGTAAAAGACTCAATTTAGGATGTCTTCTTTCAAGGGCAGATAGGAGAGGAGAGGAAAGAAAAGGCTATTACAATAAAAGAGGTCTCGTGTAAGGAAACACAAGCTGTAAGTTCCTCCTTCTCTGTATCGTCCAGCCCTGTCTTTGTAAGTACTGACACCTTCTTCCCACCACACTCTAG
Seq C2 exon
GCTAATGGCTGTGGAAGAGGAGTTAAAGAAGGACCACGCTGAGATGCAGGCAGTTATTGATGCAAAGCAGAAGATAATTGACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917:ENSRNOT00000033324:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(13.3=100)
A:
NA
C2:
PF120043=DUF3498=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAATTAGCAAACTGAAGGAGC
R:
CTGTGCGTCAATTATCTTCTGCT
Band lengths:
286-1603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]