GgaINT0038840 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6760835-6761621:-
Coord C1 exon
chr8:6761419-6761621
Coord A exon
chr8:6760923-6761418
Coord C2 exon
chr8:6760835-6760922
Length
496 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TACTTCTTTTTGTGCATCAGGCT
3' ss Score
5.46
Exon sequences
Seq C1 exon
TACGAACAAGAGATAGCAAAGCTGAAGGAACGCTTGAAAGTGTCGAGCCGCCGGCTGGAGGAGTACGAGCGGCGGCTCCTGGTGCAGGAGCAGCAAATGCAGAAGCTGCTGATGGAGTACAAGTCCAGGCTGGAGGACAGCGAGGAGAGACTGCGCAGGCAACAGGAGGAGAAGGACAGCCAGATGAAAAGCATTATCAGCAG
Seq A exon
GTGAGGCTTGGGGGGGTTTGGAACTGTGTAGGGCAAGAAGCTCCCGTGTGTGCCTTATGCTGCCTTTGACACTAAGGAAGGTAGAGCTGCACGGACAGTTTGACGTCTCTGGAATGGTACTGTCCTGCCTTGGAAGTGAAAAAACTGAGATATGGATATGGAAACTTGCCTCAGTTGCCAAGAGAGTGGAGGAATAGATTCAGGAGTTTGTAATGCTAGTCGCTGCTGTACCTAGAACTGGTCTCTTTGCTTTGTTTGGAATCAGTACTGAAGTCTATATTCTCCAGAGCAGTTGCGTTTTTGGCTATGTCCATTTTGCAAGTACTGGGGTTGGCCGTTTGGGAGCGTGAGATGGATAAGTAACCTTTCCAGAGTGCAGCAGAATTCTCTTCCTGCAGACCAGGACAATCAGAAGTCAAACCAAGAGGCCAGAATACCTCAGACATCATGGAATAATGCTGCGTTGTCCTAATTTATACTTCTTTTTGTGCATCAG
Seq C2 exon
GCTCATGGCAGTTGAAGAGGAACTGAAGAAAGATCATGCAGAGATGCAAGCTGTCATCGATGCAAAGCAGAAAATTATTGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(13.3=100)
A:
NA
C2:
PF120043=DUF3498=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAACAAGAGATAGCAAAGCTGA
R:
GTGCATCAATAATTTTCTGCTTTGCA
Band lengths:
288-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]