BtaINT0122619 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61307110-61308610:+
Coord C1 exon
chr16:61307110-61307312
Coord A exon
chr16:61307313-61308522
Coord C2 exon
chr16:61308523-61308610
Length
1210 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TCCTTCCCGCCCCATTCTAGGCT
3' ss Score
9.61
Exon sequences
Seq C1 exon
TACGAACAGGAAATCACCAAACTGAAGGAGCGCCTGCGCGTGTCCAGCCGGCGACTCGAGGAGTATGAGCGCCGGTTGCTAGTGCAGGAGCAGCAGATGCAGAAGCTGCTGCTGGAGTACAAGGCCCGGCTGGAGGACAGCGAGGAGCGGCTGCGCAGGCAGCAGGAGGAGAAGGACAGCCAGATGAAGAGCATCATCAGCAG
Seq A exon
GTCAGAGGCCGCCTGGGAGCGGACGTGGGCTGGCTCGGGGCACGAAGAGGCGGGATGATGGCTAGAGGGTCCTAAAGCAAGCACTGCGTGTCCTCCGTGATACTCTCTACAGGGGTGAAGGCTGGCTGTGTCTCTTACACTTTTCCACATGTGAGACCTTAGTGCACTTCCTCTGAGGTAGCCAAATTTTCTTTAGTTGTAACAATCAGAAACAGTTAAAACTTGGTGACTCACTTAAGAGGTCTTAGAGCAAAACTGAATTTTAAAAGTGTCAGTATCCAGCGTCCAAGACTAATTTAGATTTTTACAAGTCCAGAGAGGTCTAAGACACTGCACATCTTTAGAGCCAGAGAATCAAGGCAGAGGGCCAAGGACGTCCGAGGAAGACCAAGGGAGGGGTGCAATTTTACGAAACACTACATAGCACTGACCGTGGGCCAGGCACTTCTCTAAGCACTTTACAAATAAAATTTGTTTACTCTGTTACTGATAATTTGTTTAATGCCAGCCTCTGAGGTCAGCATTATTATTCTTCTTCTCCTCTTACAAATAAAGAAACAGGCAACAAATTCATTATGTCACTTGCCCAAGGTCACTTAGTGGTGCAACGGGTTTGAAGCCAGGTAGTCAAGCCCTAGCTCGATGCTCACAACCGCTGTGCTTCAGTTGTTAAGTGCCGTAGGCAGGTTGAAAGAGGTCTGTTGTTTTAGCAGCACAGAAGGATTTAGCAGTCTTACTGAGAGCCCTTCCATGGGGTTAAACGTCAGGGGATTAAGATATGAAATGCATGAGAAAAAAAGTAGACCTACTATGTGTCGCGTACACTCAGAAGACATTTAGCTGTTCAGGGGAAGGAAAGGTCAGCTGTCACAAAATAATGAGATTAAAAAAGGGTTTGATTTGTGTCAGTAGATTTGCTGTTTTAAAATTAAATAAGTTGTGCTAAGGAAAGGATCTGATAGAAGAGAGGGAGATAATGATGGTGAGAGTGCTACTGCAGAGGAGATGGAAACATTTGGGATCCAGTCCCAGGAGAGGCATCAGCTCTGAATGTCTTCTCCCAAGGCAGGTGAGAAGACAGAGCCTAGTGCAGATCTTGCGCTAGGAAGGAGTGGTAACGCTGAGCTGTCCTGAGTGTGGGTGTCTTGTTCTGTGTGTTAGCCTGCTCGCTCCTTGAAGCTGTTGGTCTCTCCTTCCCGCCCCATTCTAG
Seq C2 exon
GCTAATGGCTGTGGAAGAGGAACTGAAGAAGGATCATGCTGAGATGCAGGCAGTTATTGATGCAAAGCAAAAAATAATCGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537:ENSBTAT00000020658:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(13.3=100)
A:
NA
C2:
PF120043=DUF3498=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAACAGGAAATCACCAAACTGA
R:
GCTTTGCATCAATAACTGCCTGC
Band lengths:
270-1480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development