DreINT0054614 @ danRer10
Intron Retention
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12097476-12098808:-
Coord C1 exon
chr8:12098612-12098808
Coord A exon
chr8:12097564-12098611
Coord C2 exon
chr8:12097476-12097563
Length
1048 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
ATATCTATTTTTTGTTTCAGGTT
3' ss Score
11.49
Exon sequences
Seq C1 exon
CATGAGATAGCCGTCCTGCAGGAGAAGCTGCGTATTTCTGCCAAGAAGCTGGAGGAGTATGAATCTCGTATGAAGAGTCAAGACGACCAAACGCAGAAGATGCTCCTGGAGTACCAGGCCCGGCTGGAGGACACGGAGGAGAGACTACGCAAACAGCAGGACGACAAAGAGCTGCAAATGAAGAGCATCATCACCAG
Seq A exon
GTGAACATCTGTAGAGAAAATTCATTTCAAGTTTATTTGTATTAATTAATTAACTATAATTATTGTGCCAAAGCAGCTTTACAAAAGGAGCACATTTTTGCGTTATAATCAAATTCAGTAAAAATGAAGGTTATTAGTTATCATAACTTTATTAGTTACTAATATCTTAACTAATTAACCAGTAACTAATAGTTTTTAACAGTTAAAGTTATATACACTCACCGGCCACTTTATTAGGTACACCTGCCCAACTGCTTATTAACGCAAATTTCGCAGTGTACCCATCTTCTGATGGCTACTTCCAGCAGGATAACATGCCATGTCATTAAGCGTGAATCATTTCAGACTAGTTTCTTGAACATGACAATGTGTTCACTGTACTGAAATGGCCTCCACAGTCACCAGAACTCAATCCAGTAGAGCACATTAGGGATGTGGTGGAACGGGAGATTCGCAATATGGATGCGCAGCTGCCAAATCTGCAGCAACTGTGAGATACTATCATGTCTATATGGACCAAAATCTCTGAGGAATGTTTCCAGTACATTGTTGAATCTATGGCACGAAGGATTAAGGCAGTTCTGAAGGCAAAAGGGGGTACTATTAAGGTGTACCTAATAAAGTGGTGAGTGTAAACATAGTTAACCTGCATTTATAGAGTGTAAAGGTAATTTCGATGTATACATGATCAATGGAGTGTATTTGTGTATTAAGTGTTGTCCATCAAAGGAGAAACAGAAAAGTTTGAAGATCCTTCTGGAAATTGATAGACTGTAGGTTCGAAATGGTGCTTTACAGATTTATAGACATTATTTGGTAGCGCTACACATTTAATATTAATAATATTCCAAATTTTGCCTTCTAAGAGATGGTACAAGATTGCTAACACAATTTAGCCATGAGAGGTAAGATAACTAGGGTGCAAAAGTTACTTTACAAATAGATAACATTCTGATTTACATTTTCTATGGGTTTTGGTTAGTATTATGTTATAGACAGCTCAAGTAGCTTCTAAAGCATGAAGATGTATATCTATTTTTTGTTTCAG
Seq C2 exon
GTTGATGTCGGTCGAAGAGGAGCTGAAGAAAGATCACTCAGACATGCAGGCCATCGTAGACTCCAAACAGAAAATTATCGAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484:ENSDART00000135812:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.633
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(12.9=100)
A:
NA
C2:
PF120043=DUF3498=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAGATAGCCGTCCTGCAG
R:
TGGGCTTCGATAATTTTCTGTTTGG
Band lengths:
284-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]