MmuINT0050141 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138178195-138184724:+
Coord C1 exon
chr7:138178195-138178221
Coord A exon
chr7:138178222-138184400
Coord C2 exon
chr7:138184401-138184724
Length
6179 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
AAACCACCATGTCTTTCCAGGAA
3' ss Score
7.81
Exon sequences
Seq C1 exon
CATCTCAAACAGCTGTTCCCACAGATG
Seq A exon
GTAAGTACTTTGAAAATATGGACCTGTATCAGTGTATGATTTCCCCCAATGTCGTGATAGACACTGCCTCAATAAATGGTAATAAATGACACTAGGATGAAATATATAGTGTTCCATGTAGACGGTAATGACAATAGAAACTCCTGCCAGCTAGAGCATAAAGGACCCTGTGTTAAGACAATTGCAGTGTTCATTTTTATGTTGCTCCTGCCTCATATTACATTTTATGTTAGAAGCGAATAGAATATCTAAATGCAGGCCTTGGATTCGGTCCTGGTGCAAGAAGTTCTGACTAGGAGACATGAAGCAAACTCAGGGATCAGTGGTTGGCAGATGATATATAAGAATAACTTGCCTTCTTCATACTTGGACCAACTCCTGCTTGAACTAAGACGAATCAGAATCTGATGTTAACAAGATTATAGGACCATTTGCTTGCCATTGGTTTATTTACTCTATTTTGAGACCCACCTAGCCCAGGCTAACCTCAGACATGCTATGAAGGCAATGTTACCCTTGAACTCATGATCTTCTTGCCTGGAGTTTCCAGGTTGTAAGAATCTAGAATTGTGTCACCATCCCCCAACTCTTGTCACATTTGAAATGACATAAAATTCACCTCCAACTCCCTGGCTTTTATCTCCTTTTGCAAAAAAAAATTATTTATCAAGACCTTGGGTAGTGCACATAGACAAAACTGAAACATTGATCCCCCCACCCCCAACTCCCAGGGGAATGAGTGCATTCGAGGCTAACCTTGTACCCTGTATGAGACTATATCTAAGAGGTGGATTCAATTCTAAGCTGAGCTTTGTCTTTTTTAAGGTTGGTGGACCCAGGGAGTGTAGGGGACAAATAACCATAAGGCCTTCTTCTTCGCTCTTGTTTCTGGCTTTGGGCTACTGATGGAATAGGGGTTGGATCTGCTTCCTGTTGCTGGGATCACACACAGGCTCTAAGCAACTTGGAGGAGGGAAGGTCTCTTTGGCTTACAGGTCACCATCCATCATTGAGTGAAGCCAGGGCAGGACCTGGAGGCAGGAACTGAAGCAGAGGCCATGGAGGAGCCCTGTTTGCTGGCTTTCTGACACATGCTTAGCTAGTGTCTTATACAGCACAGGCTCACCTGCCCAAGGACAGTGGGCTGCCCTTGCCCTGACAATTATCCATCAAACCAATCCACACAGACAGGGCCACAGGCAATTCTGATCTGGGCAACTCCCAGATTGAGAGTCCTTTACTTGACTTAGTTGGAGCTATGTTGACAGTGGAGATAACGAGGACAAATGGCCAGCATTGCTGCTGCTGCTTGGGGAGAACCCAACAAAATTGTTGGGCACAGAAGTCAGGGGTGGAGTAGAGAGGAGAGATGTGGGTATCAAGCTGTTGGGTATACCCCACCAATCCCCACCCTTCCCCTTCACTCTTCTCTCTGCCCTCAGTCACGTGATGGGTGAACTTGGCTTTAGCCTCCTGTCTGTAGGGCTAGTGAAAAACAGTCACTGTTTCTTTCTTCCAAAATTAAATATTGCACATAATCAATGCTCAGATATTATAGGTAATATGTGCTATTATCAAAATACCTTCTTGGCAGGAACTCCAGGGAAAGCTTTTTGACCAACTCCCAGAAAGGAACAAACCAAGGCTGGCAATTCTCTAGTGGGACCAATCAGAGAGTGACCAGCAGAGGGTAGTAAGTTTGCGTCCTGCAGACACAGGGCCTTCTTTGGGAACACCTTGGAAGGTTCAGGTTTCCTTTGCCAATCCCCATAGCACCCTCTGAAGATCTCCAACAACAGTAACTGTCTGATCCTCTTACCTTGTCTCCACTTCCTCTCACTCTCAGATCTCAGAGTTCTCACAACCACAAAGGAGCCACCGAAGGGTACACTCAGAATGGGCTCCTGCTGTCAGGATGCAGAACCTGTTTTTTTCCTGCTATCACATAGCTGCTGTCTGTTTCCTCTCACAACACAGCACAGATATAATTGTGAGAGACATAAGGCCAGCACTCCACACAGAAGCATGCTGCCTGACCAGTCATGTGCATTCTTACAGTGCGAGAGTAGACTGGAGGGCTGGAGAGAAGACTGCTGTTAGATGGACTCCATTGTAACCTTGACCCTGATGAAGATGGAGTGGATGCAGAAGCACCCTTGTGGGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGACAGAGTCTCACCATGTAGCCCTGGCTGGAATTCCTCATGCAGACCATGTAGACCTTGATTTGCATAAACCTACCTGATTGTGTCCCAGTAGTGCAGGGATTAAAGGTGTGAGCCATCATTCCTGGACTTTGAGAAAGCAGTTTGGGACAGGGAAGTAACTAAAATATATAGGTGTTTTTTCAAAATAAAACTTAAGGAGCAGCCACTGGTCATGGGTGGGTCGTCGGGACAGCCCTGGGCATGACTTCAGAGACTATGGGCAGGTCTGTGATAAGCAGCATTAGATAAGAGCTAGACAGAGGCAAAGTTGAGTGGAGATGTCACAGAGAGGTCACAGAGCAGGGCAGGTTGGAGAGGAAAGAGGTACAGCCTAGTGGGTGAGCCTTAGTGAGAGCTGAGAGTGAAGGTGGAAAGAAACAGACATCAAATGTGATGTCCAAGTTCCAGCACACTTGTGGCTGTGCATGGTAGCATCAAAGATCCCAATGAAATACTGAGTTTAGAGTGGTTGACATGGATATCCTGGATACTGATGGAGTGATATCCAGTGTGAGTCTGGAGTTCTACACTGGGACTGTCAGGGCTAAATAAGGACTAAAGAGGTGACCTTGAGAGACCCTTGTCTAGGATGTTTCCAGAGGATATGGGGAAGAGGATACTAGGAAGACGATGTAGAAAGTAACCTTTTGGCTCCTAGGGTGGGGAATGACAAGTAAGACAGCCCTGCAGGCCAGGGGAGGAGAGGGTACATGGTGGTGCTGGCACAGGACACAGAAGCCACAGAGCCCAGCATGCCAAGAGAGCAGTTCCCGCTGTGTCAATGCAGGTTTGTCTCTGAGGCTGGTGAATGGCAGTGACCGCTGTCAGGGCCGGGTGGAGGTCCTGTACCAAGGCTCCTGGGGCACCGTGTGTGATGACAGCTGGGACACCCAGGATGCAGATGTCGTCTGTCAACAGCTCGGCTGTGGCCATTCTGTGTCAGCACCAGGAGGGGCCCATTTTGGAGAGGGCTCAGGGAACATTCTCTTGGGAGCTGTGCACTGCTCAGGATGGGAGTCCTACCTGTCCAGCTGTCAACATGACGGGTGGTACAACCATGACTGTGGCCACAGGGAAGACGCCGGAGTTGTATGCTCAGGTAGTGTTGTTGTGACCTCTAGATGTTGCACTATATGCCTAGGCAACATTGTGATTGTGTGTGTGCACACATGTCTGCCTGTGTGTGCATGTGTGTGTATGCATGTACTCACACAGCTTGAGTGTGCTTCTGCTATGAGTCATACCTTATTTAATGTCAGAGGCTCTATATCGCAGTCTCTGTTCATAGATGATGACATTGAGTGCTGAGAAGTCCCAAACTGGGAGGTGGTGAAGACAGATTTTTAGCTTCTGTCTCATCAGAGCTCACTGACACCATCACTCAGTGATGACTGGGACCAAGATTATCCTTGACCCTGAAGAGGATAAGGCGACTGCTGGTCCTTACCACCTAATTGTATAAAGCAAACGCAAAGCAATGAGTGGCCCATATGTCCTCTCTATTGGAGATTACATGATAAACAGAAATACACCATCTTGAGGGCGACAAATTCTCCCTAATCCTAATCCTAATTGATTATATGATGCTGGTATCCATTCAAATAAAGGCAGCTTTTAATCTACAAAGAAGGCACCCAGGGTTGCAGTCCATTGTATGTAGCCAAGAAGATTTCTAGTTCAACCACTGGTAGGCAGTTTTTATATCCTGGACTGTGCGCATGTCACAGGAAACAAAGAGTGACCGAGTGGATCACAGCCCACCTGAGAATGGCACTTATTCTCAGGACCATGGTCCTGCCAGCAGCCACACTGTGAGAGGCTCTATCTGCCCTTCCAGAATAATCCCTGGAAGTCACCTCTTTTGTTAGTTAGAGCCACTTTCTCAGGATTGTTTCAGCAATGGCAAATGTTTATAATGAGAGGTTATGTCTGGGTTCCTCAAGGTAGGACCAACACCCAGTGAACTCTTTCTCATTCTGCAGAAGTGTCCTATACAGCTGAACAAAGCACAGAAGGTAAGTTGTAGTAGGTTGTATCCCTGTGGCCTATTGTCCCCAGAACCCCCAGACTCACCTCCTATCAGAAGATGGGCAGAAGGAAGAGCATGTGGAGTCCTTAGCAACCAGGGAAATTTCCCAGTAAGGTCAGGCCTATAGCGGCGTATATGCCATGGATTATGGCCCTGAGTTGTGCAGGTTGGGGAGGATCAGCCAGAGGAGGCACCTTCAAGGGTCACCAAGGACTTCTTTTTTGTAGGGATTCCATTGACCAGTCTCAGTGCCCCGAGGTCCCCATGTTTCATCCACACCTTGGCCAGTCTAGGGAGCAGAATTTATAACTTCAGTGCCTGGAGAGGAAATCAAAACTCTGCTTAGCCAATGCCCTTGTCATTTCCTTTCATCTAAGGCCTTATAAAGCTACTCTGGATGCCTGAATCACCAACAAGGGACATTAAATATCCGGTTCCATCTCTTTGAGTTCCTCCAATGAGTGGTGTTGGTGGCACATCAGTACAGTTTAGACGCTGATGGCCTGGGCTTTGGGAAAGAAAATCCCTTTCTTCTCTCCTTGGCATTCTTTTGATCCTAGGACACTGCAAGAACTGTTTCCATAGCAGTGTCTCTGGCCAGCCCAGGGTTTGTAGGGAATCCAATTGGCCCAGTGTCAGGCATCACTTTTCCTTAGGAATATGAGGTGTCCCAAAGATGAGGCTGGCTTTACTCTCACTAAAGCCATATTCCTTCCCAAGATTCCACCCAGTTTATATCAGGAGCTGCTGTGTAGGGGAGAGGTCAATTCTTTCTGTATCCTGAGACCTTTGAAGGTTATGCAGAGCTGGTTGCTGGGTGCCAGTGGGTTAATGTCTTGATATCATCACTCCAATCCCCAGTACCAAGTATACTCTTGAAGGCACTGTGTCTGAGAGCCAGGGCTCTTTTAAAGTAATTTAAACATATGTTTGAAATTTGTCTCTCATTTAAAGAGGACAGATTAGAGTAATTTCCAAAACAGTAAAAAAAATGAGCATGTCCACACACACATATACACAACCACACACACATACATAACACACACAACAGCACATAGACAACACACACACACACAGCTGAGAGTGTAGGATGACATACAATATTCTACCACTCATGATGCTGAGCTAGTAGGTTGTTGAGTTTCAGTGTAGCCTAGGGTACATGAGGCAGTCATGTGATCCAGGACAGTAGGGGACAGGCAGCTCATTCAGGTTTATAATTTTGTATTAGGCCTGAAAGCAATTCTAATGTAAACTGTCAACCATGTGTATGTAAGCAGCTGTTGAGAGCCTTTGCCATGCACTCTTTTGACGGTAGGATCATCTTTAAGCCCCTTTGGTCTATTTTAGACCAACCTGCTCTGCCTTCTCATTTACTGCTGACAGGTATGGCTCAAGGTAGAGAGTAATGTGTGCAGGTCCAGTGTGTGAGGAGTTGGGAGGGGTTTGCAATCTCTCTCTCCTTGAAATAGTCTTGATTCTACAGTACACGGCCCTCCAAGTACCTCCAAGCCATAGGTACAAGGTAGAGTAAGTTTCTTGTCACTATTCAAGGCAGATTCAACCTATGCCAACACAGTTTGCAGAAACTTATTCACCCGGGTGACCAACTTGGTCCTCATGTCTAGGACAGAAGTAGAGAGCATTGTAGTGAAGGTTCACAGGCAAAGTGAGAGGGTACAGATCTTTACAGGTCAGTGTGGCCAGGATGCAGCAGCAGGAGCTGTTCATGTCCTATATTGCTTTAAAGTTCATGAGTGAGCTGCCACCAAGTGTACAAGTGAGACATGACCAACAATGGAGAAACCACCATGTCTTTCCAG
Seq C2 exon
GAACAGATTCTGGTTTGGCCGTGAGGCTGGTGAATGGAGGAGACAGGTGTCAGGGTCGAGTGGAGATCCTTTACCAGGGTTCCTGGGGCACTGTGTGTGACGACAGCTGGGACCTCAATGATGCCAACGTGGTGTGCAGGCAGCTGGGCTGTGGCTTGGCCGTGTCTGCCCCGGGAAATGCCAGGTTTGGACAGGGCTCAGGGCCCATTGTCATGGATGACGTGGCCTGTGGAGGCTATGAGGACTATCTGTGGAGATGTTCCCACCGAGGCTGGCTCTCTCATAACTGTGGACACCAGGAAGATGCTGGAGTCATCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: