MmuINT0050324 @ mm9
Intron Retention
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19672589-19673049:+
Coord C1 exon
chr7:19672589-19672682
Coord A exon
chr7:19672683-19672842
Coord C2 exon
chr7:19672843-19673049
Length
160 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTCAGGTCTGATTGGCACAGGTG
3' ss Score
3.55
Exon sequences
Seq C1 exon
GGACATCAAACCAGATAACATTCTGCTGGACCGATGTGGGCACATTCGCCTGGCAGACTTCGGCTCCTGCCTCAAACTGCAGCCTGATGGAATG
Seq A exon
GTAAGAAGAGCCTGGCGAAACTCTCCTCATTGGTGAAGGACCGGATTAGGGGGCGGGGCTGGGTTGAGGAGCAGGAGGGGAGCTTGGTCTGGGATGTCCTGCGCACCATATTTGGACAGTCAAGGGAAAGGTTTTAAGCATTCAGGTCTGATTGGCACAG
Seq C2 exon
GTGAGGTCGCTGGTGGCTGTGGGCACCCCGGACTACCTGTCTCCTGAGATTCTGCAGGCCGTTGGTGGAGGGCCTGGGGCAGGCAGCTACGGGCCAGAGTGTGACTGGTGGGCACTGGGCGTGTTCGCCTATGAGATGTTCTATGGGCAGACCCCCTTCTACGCGGACTCCACAGCCGAGACATATGCCAAGATTGTGCACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409-Dmpk:NM_001190491:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(11.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTCGCCTGGCAGACTTC
R:
GCATATGTCTCGGCTGTGGAG
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: