MmuINT0050585 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125245158-125246085:+
Coord C1 exon
chr5:125245158-125245336
Coord A exon
chr5:125245337-125245873
Coord C2 exon
chr5:125245874-125246085
Length
537 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GTCTTGTCTAATGTTTCTAGCTT
3' ss Score
5.8
Exon sequences
Seq C1 exon
GCTCGGAACTCTTAGGCAGTTTTGAAAAGGAATTGGCAAAGCACGAGAAGAACCGGCAGGAACTGGCCAATGCGGAGAAGCTCTTTGATCTCCCCATCACCATGTACCCTGAGCTCATCAAGGTGCAGAAGGAGATGACGGGGCTCCGGATGATCTATGAACTGTACAACTCTCTGAAG
Seq A exon
GTACGGCCCCTCCCAGGTGACTCCCCAAGCTGGGCACAGGGACATACACCCTCAGGTGCAGCATTATGTCGGGAAGGGCTCAGAATGTCCATGGCCCCCTCCCCCTCCTCCTCCTCCTCCCCCCTCTCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCTCCTCCTCCCTCCTCTTCCTCCTCCTTCTTCCTCCTCCTTCTTCTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCTTCCCAAGTGCTGGAATTAAAGGCGTGTGCCACCATTGCCCGGCTATAGCCCCTTCTTTTTGACCTCAACACTTGCCTTTACAAGTGAGAGGTTCCTTTGAAGAGAGAGCCGAGAGGGGCCAGGGCTAAATATGCATCTTGTCCCTTCCTTACATTTATGTCAGGCCCCAAGATGCTGTCTTGTCTAATGTTTCTAG
Seq C2 exon
CTTGCCAAAGAGGAATGGTCCCAGACCCTCTGGATCAACCTGAATGTCCAGTATCTGCAGGAAGGTATCGAGGGCTTCCTCAAGAACCTCCGCAAGCTGCCACGGCAGGTGCGCGGCTTGTCCGTGGCCTTCCATTTGGAAGTGAAGATGAAGGCGTTCAAAGACTCCATCCCCCTGCTTCTGGACCTGAAGCATGAGGCCCTGCGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(5.6=38.3)
A:
NA
C2:
PF083938=DHC_N2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGAACTCTTAGGCAGTT
R:
GGGATGGAGTCTTTGAACGCC
Band lengths:
352-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: