DreINT0009105 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27728592-27729068:+
Coord C1 exon
chr5:27728592-27728770
Coord A exon
chr5:27728771-27728856
Coord C2 exon
chr5:27728857-27729068
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTTACA
5' ss Score
-0.83
3' ss Seq
AGTGTGTCTACTTTTGTTAGGAA
3' ss Score
4.46
Exon sequences
Seq C1 exon
GTTTGCAGATCATGAGTACCTATGAGACAGAGCTGGTGAGGGTAGAGGCGAGACGTCAAGAACTGGCTAAAGCTGAGAAACTGTTCAATTTGCCCATCACTATGTACCCAGAGCTTCTCAACGTGCAGAAGGAGATGAGGGGCCTGAGACAGATCTATGAGATTTTCAAGAGTCAGAAG
Seq A exon
GTTACAGTGGAAATTCAGATCAATAAACATTGAAATATTGTTATGTTGGTCACATGTTGTAACACAAGTGTGTCTACTTTTGTTAG
Seq C2 exon
GAAGCTAAGACAGAGTGGTCGCAGACCCTTTGGGTTAATCTGGACATTCAGCTCCTTCAAGAGGGTATAGATGGATTTATCAAGAGCTTACGGAAGCTCCCGAAGGATGCGAGAGCTCTTCCTGTATCGTTCTTTCTGGAGGGCCGCATGAAGGAGTTCAGAGAGTCACTACCTCTACTCTTGGACCTTAAAAATAAAGCTCTCAGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(5.6=38.3)
A:
NA
C2:
PF083938=DHC_N2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGGGGCCTGAGACAGATC
R:
AGGAAGAGCTCTCGCATCCTT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]