MmuINT1008716 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124764788-124765715:+
Coord C1 exon
chr5:124764788-124764966
Coord A exon
chr5:124764967-124765503
Coord C2 exon
chr5:124765504-124765715
Length
537 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GTCTTGTCTAATGTTTCTAGCTT
3' ss Score
5.8
Exon sequences
Seq C1 exon
GCTCGGAACTCTTAGGCAGTTTTGAAAAGGAATTGGCAAAGCACGAGAAGAACCGGCAGGAACTGGCCAATGCGGAGAAGCTCTTTGATCTCCCCATCACCATGTACCCTGAGCTCATCAAGGTGCAGAAGGAGATGACGGGGCTCCGGATGATCTATGAACTGTACAACTCTCTGAAG
Seq A exon
GTACGGCCCCTCCCAGGTGACTCCCCAAGCTGGGCACAGGGACATACACCCTCAGGTGCAGCATTATGTCGGGAAGGGCTCAGAATGTCCATGGCCCCCTCCCCCTCCTCCTCCTCCTCCCCCCTCTCCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCCTCCCTCCTCCCTCCTCCCTCCTCCTCCTCCCTCCTCTTCCTCCTCCTTCTTCCTCCTCCTTCTTCTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCTTCCCAAGTGCTGGAATTAAAGGCGTGTGCCACCATTGCCCGGCTATAGCCCCTTCTTTTTGACCTCAACACTTGCCTTTACAAGTGAGAGGTTCCTTTGAAGAGAGAGCCGAGAGGGGCCAGGGCTAAATATGCATCTTGTCCCTTCCTTACATTTATGTCAGGCCCCAAGATGCTGTCTTGTCTAATGTTTCTAG
Seq C2 exon
CTTGCCAAAGAGGAATGGTCCCAGACCCTCTGGATCAACCTGAATGTCCAGTATCTGCAGGAAGGTATCGAGGGCTTCCTCAAGAACCTCCGCAAGCTGCCACGGCAGGTGCGCGGCTTGTCCGTGGCCTTCCATTTGGAAGTGAAGATGAAGGCGTTCAAAGACTCCATCCCCCTGCTTCTGGACCTGAAGCATGAGGCCCTGCGAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(5.6=38.3)
A:
NA
C2:
PF083938=DHC_N2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCGGAACTCTTAGGCAGTT
R:
GGGATGGAGTCTTTGAACGCC
Band lengths:
352-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types