GgaINT0008931 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4936822-4937845:-
Coord C1 exon
chr15:4937667-4937845
Coord A exon
chr15:4937034-4937666
Coord C2 exon
chr15:4936822-4937033
Length
633 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CCTGATAACCTTGTTTCCAGGCA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GACTGGAACTCATGGCCATTTTTGAAAAAGAAATGGAAAAACTGGAAGAAATTCATCAGGAACTGGGCAGTGTTGAGAAACTTTTTGACTTGCCAGCTAAAGTGTATCCTGACTTAATGAAAGTGCAGAATGATATGAAAGGTCTAAAGCAAGTCTATGAAATTTATGAATTACAAAAG
Seq A exon
GTAAGTGTATGCACGCTCATATTCAGGCACATACCACATGCAGTGGTGGGAGATAGAGGAGCTTGCGTTGTCCTTTAGTTACTAGAAACCCTGTTCCTTTGCATGAAATAAACTGACGTGTGATTTACCATCATGATGTCAGTTTAATAACGTTAATAGAGGAGGACAGAATGTCTCCATAGTGAACCAAACACATACATTTATCAGATAGGAACAGCCAGTCATTCCTTGGAAATTATTGGATGATTTTATGTTGTACATGTCTCCTGATTATTTCAGTGGGATTACTTTTGGACATACAGGTGACAGTGGATATCTCAGGCTTTAGTCAGTCTTGTAATTTTTAAGAAGTTTTACTTTTTCAAGATTAAAATGCCCTGATGAGCCAGCAGCCAGACTGATCAACTGTAAATTATGCTCTTAAGAATGATTTTCCACTTCTCCATGTTTACTTCTGGTTTATTCATTATTTATTTTGGTTATGAATCTGTCCTGAATGTTAACCCACCTCTTTCTCTGTTTGTGAAATGTTGATGCAATCACATGTATATCCTGACTGTGGTCTCTGGATCCTGCTGTACCAAAAAATAAAGAGAAATATGATTCTTTTCCTCCTGATAACCTTGTTTCCAG
Seq C2 exon
GCAGCTAAAGAGGAGTGGTCTCGGACACTCTGGATAAACCTCAATGTGCAGTTTCTTCAGGAAGGAATTGAGGGATTTCTTAAAGCTTTTCGAAAGCTGCCCAAACAAGTCCGCAGTATGCCAGCAGCCTGTCACTTGGAAACAAAACTGAAGGCATTTAGAGACTCCATTCCTTTGTTGCTTGATTTGAAAAATGAAGCTTTAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(5.6=38.3)
A:
NA
C2:
PF083938=DHC_N2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGGAACTCATGGCCATTT
R:
TGGAGTCTCTAAATGCCTTCAGT
Band lengths:
348-981
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]