BtaINT0050172 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54145169-54147479:-
Coord C1 exon
chr17:54147301-54147479
Coord A exon
chr17:54145381-54147300
Coord C2 exon
chr17:54145169-54145380
Length
1920 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TATTTCTTGTTCATTTCCAGGTT
3' ss Score
10.57
Exon sequences
Seq C1 exon
GAGTAGAACTTTTAGCCACTTTCGATAAAGAGCTGATGAAACATGAAAAGAACCGTCAGGAGCTGGCTAATGCTGAGAAGCTTTTTGATCTTCCAATCACAATGTACCCAGAGCTGCTCAAAGTGCAGAAGGAAATGAGCGGACTGAAGGTGATTTACGAGCTCTATGAAGAACTGAAG
Seq A exon
GTAAGCGTCCACCTGCAGATTTGGTCTCCATGGAGGGAATGTGGCTCAGTGGACTTTGAGGTCATAGTCATAAAGAGCCTGGGGCAGAGTTCAGAGAAACTCGCACTTTAGATCTTGGGAGGAGGTGATGGGGGGTGACTGCTAATGCGTACGAGGTTTCCATCTGGGGTGTGGAATTCTGGAACCTGATGGCTGTGTGATGGCTGCCTAACACTATGAATGTCCTGCTTTCCACTGTACATATTTCTGGTAGAAAGCAGGTCAATGGTTACCTAGAGGTGGGGTGGAAGGAGAGGGGTGGGAGGGGGTGATTACAGAGTGGCAGGAGGAGACCACTGAGCGGGATGGTGATGGATACGTTCATTATCTAGATGGAGCTGATGGTGTCACAGATGTGCACACGTCAGTTGTACACTCGAAATACATGTAGCTTTATCGTACACCAGCAAACTCTCCATAAAGCTTCAGAAAAACAGAGAGAATGGGGAGAAAGGCGTTAGAAACGCCAAGTATAGACGATGTTTCCAGTGAGTCTTGTTACAAAGAGAAGCAGAGAAAGGAGGACTGGTGGGTGAAGGGGATGTGAGGTCAAAATAATTAAAACATTTTTCTCATTTATTTATTTTTTGGCTGCCTTGAGTCTTTGTTGCTGTGCACAGGCTTTCTCTAGTGTCTCTAGAGAAGGAACAGACAGACTCAAGAGGGAAAGGAGGAGGGTGGGGTGAATTGGGAGACTGGGATTGACATATATACATTGGTGATACTATGTATAAATCAGAAAACTAATGAGAATGTTGGGTGCAGCACAGGGAACTCTACTCAGTGCTCTGTGGTGACCTAAATGGGAAAGAAATCCATAAGAGAGGGGATGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGATGGCAGCCCACCAGGCTCCCCCGTCCCTGGGGTTCTTCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATTCGTGAAAGTGAAAAGTGAAAGTGAAGTCACTCAGTCGTGTCTGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCGAGAGTACTGAGTGGGGTGCCATTGATGTATATATATAGCTGATTCACTTTACTGTACAGTGAAACTAACACAACTGAACAACACAACTAACACACAAATATAACACGACATACACATCATAAAGTAACTATACGCCCATAAAAATTAAAAAAAGAAATCACCGGACACATATTACATGAATTAACATAATTTCCTGTCAAGCATGTTTCATGATTCAAGCAACTCTGTCGAGCCTGGATGTCACAGGTTGCAAATGCCAACCACCCAAGATGGTAAATTGTATGTAAGACAGTACTTTTTACATTCAGTCTCAGGGAGCTACAGCACAAAGTCTTTTCTTTATGATAACTAAGCAGGAGTATCTAAGTTGCTGGTATTTTGTAACCTTAGCTTCTTTTGTCAGAAAAGGACAGCGCTTGAATGAAGTGCATATTTTAAGACCCCCGTGATTCCTTGAGTTAAAAACACTGATTTCTGACATCCTGCTTTTCTGTTTTCCTTGAAAGAAAGGCATATTTTTGGATCCCACACATTCTCAGATACAGCCTTATTTTTGTGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCCACCCATGGATTGAACCTGCGTCTCCTGCATTGACAGGTGGATTCTTTACCACTGAGCCACCAGGCAAGCCTCCTGTTGTGGGGAAATGGATGTTAATATTTGGAGAGAAACGAGCATGCCAAGGGTTAAGAATGTGCTCTCCCTTCCAACCACCTTTGAGTTTCCAGACCAGTCTTGTTGATGGGACTATTTCTTGTTCATTTCCAG
Seq C2 exon
GTTGCAAAGGAAGAATGGTCTCAGACACTCTGGATCAACCTGAATGTTCAGTTTCTCCAGGAAGGAATTGAAAGTTTTCTCAGGTCCCTCAGAAAGCTGTCCCGTCAGGTCCGAAATTTATCGGTGGCCTACCACTTGGAATCGAAAATGAAGGCATTCAAAGACTCAATTCCTTTACTTCTTGACTTGAAGCATGAGGCTCTAAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PU(5.6=38.3)
A:
NA
C2:
PF083938=DHC_N2=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAACCGTCAGGAGCTGG
R:
CTGTCTCTTAGAGCCTCATGC
Band lengths:
346-2266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development