MmuINT0050797 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117895050-117895690:-
Coord C1 exon
chr11:117895557-117895690
Coord A exon
chr11:117895293-117895556
Coord C2 exon
chr11:117895050-117895292
Length
264 bp
Sequences
Splice sites
5' ss Seq
AGGGCTCTT
5' ss Score
-10.11
3' ss Seq
TCCACTCAGGCCTGAGGCAGGGC
3' ss Score
-6.02
Exon sequences
Seq C1 exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCACAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTAGCTGAGAACGCGCTGGATGTGGCTGCCGAAAAGGGACACTGGGTCATTCTGCAGGTGAGG
Seq A exon
GCTCTTCTGCCATCATGGTCACGTCCCTGGGGATGGGATAGAACCTCCCATTGCTGGGGCACCACTCTACGGCTCCCCAGCACAGAGCCCCTCCATACCCCCTTACAGCTCCTAAAAGGGTGCTGGGGACCACGCTGTCTATGCTTTGAGCCTGGGGGGGGGGGGAAGCAAACAAGGTGGATCCTAAGGCTGTTACCAGGAACACTCCACACCAGTTAGGGTTGACAGGGTTGGCCCTGTGGGGTCCACTCAGGCCTGAGGCAG
Seq C2 exon
GGCTCCTTGCCACAGAACATTCACCTGGTGGCGAGATGGCTGGGTATCCTGGACAAGAAGGTAGAACGCTACAGCTCGGGCAGCCATGAGGACTACCGAGTGTTCATCAGTGCTGAGCCTGCTCCCACGGCTGAGACGCACATCATCCCCCAGGGCATCCTGGAAAATGCCATCAAAATCACCAATGAGCCTCCCACGGGCATGTATGCCAACCTGCACAAGGCGCTGGATCTTTTCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:73
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PD(3.4=11.1)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGACAAGAGGTGGTAGC
R:
CCTTGTGCAGGTTGGCATACA
Band lengths:
302-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: