BtaINT0050392 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54395409-54397201:+
Coord C1 exon
chr19:54395409-54395536
Coord A exon
chr19:54395537-54396973
Coord C2 exon
chr19:54396974-54397201
Length
1437 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
AGCCCTGGTCTTGGCCGCAGAAC
3' ss Score
7.13
Exon sequences
Seq C1 exon
GGAAAAAACTGGGATTTACCATAGACAACGGGAAACTCCATAACGTGTCCCTGGGGCAGGGACAAGAGGTGGTGGCCGAGAACGCCCTGGACGTGGCGGCGGAGAACGGACACTGGGTTATCCTCCAG
Seq A exon
GTGCGGGGGAGAGGGTGCCCACGCCCCTGTGGGTAGGGGACGCCAGTGCCCCTGGTGGGAGGGCTCCCCAGGGCCTCAGCACCCGAGGGGATTGGCCTGAAGGCCAGAAGGAAGGGATTCGCGTTCACCAGCCTGGCTGGGACTCCTGCAGCCTCTGGAGCAGGGCTCGGGGCAGGAGTCTCCCACACCAAGCACGGCTCCGCCTGGTCAGCAGGTGGCCTGGGGCGTCACCGCTGTCCTGGTGCTGCAAGTGTGGATCCTTCAACAGTGAGAAAGACATCCTCCCTCCTCCCCGTGCTGGCTCGACCGCCCGTCCTTGGCCCTGCAGCCTGTCCAAGTCCCCACCCTGGTCCGCCCCGGGTTTGGCAGACCCCGCAGCAGGGCAGACCTCAGTCCACGGGGCCTGGCCCGGCCCCGTGTGGGGATCCCGGGTTTAAGTCCTTCTCTTAGTTCATTTTCTTTTACAAAAACGATCTCCACTGTAAGTCCAGTTACCATCTGTCAGGAAAGACATTACCTCACCTTCCCCACCATGCCTGTGACTCATCTGTTTTGTAACTGGAAATCTGCGCCTCGTAATCGCCCTTCCATTTCTCTCCTCCCACCACCCCTCTGACAACCACCTGTTTGTTTCATCTATGACTGTTACGTTTGTCCATTTGTTGTTTGGATTCCACACGTAAGTGAAATCATATGGTATTTGTCTTTCTCTGTCTGACTTCTTTCACTGAAGCATATTCTCTAGGACTGGCCACGTTGTTGCTGATGGCAAAATTTCGTTCGTTTTTAGGGCTGAGTAATATTCCATTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTAGGTTCCTTCCACACCTTGGCAGCTGTAGACAATGCAGCTGTGAACACAGCTACGTGTATCTTTTGGAATCGCGTTTTCATTTTCTTGGATAAATGTCCAGAATTGGGGTTGCTGGGTCACAACACAGTTCTATGCTTCATTTTCTGCGAGGAACCTGCAAACTGCTACCCACAGGGGCTGCACCAATTTACAATCCCACTAACAGTGCACGGGGGTAGCCTTTTCTCCAGGTCATTGCTTTCCACCCAAGCCTCTCAGAGGAGGGGCGGGGACCATGTAACCCAGCATCAGGGACCCAGCCCTGATGCTGGGTGGAGGGTGGGAAAGACTCACCGAGGCTGGAGGCCCTGAATTAACTGAGCACCAGCCTCGACTCCGGGGCCTCAGTCACTGGGTGAGATGACCCAGTGTGGCCAGCGCCCCGGGGAAGGGCAGACGGCAGGGTCGGGACCGCTGCGGAGGGGCCTGTCCTGGGGAGGAACGTGCAGGTGCTGAGCCCTGGTCTTGGCCGCAG
Seq C2 exon
AACATCCACCTGGTAGCCCGGTGGCTGAGCACCCTGGACAAGAAGCTGGAGAGGCACAGCGCCGGCAGCCACGATGACTACCGCGTGTTCATCAGCGCCGAGCCGGCCCCCAGCCCCGAGAGCCACATCATCCCCCAGGGCATCCTGGAGAACGCCATCAAGATCACCAACGAGCCGCCCACGGGCATGTACGCCAACCTGCACAAGGCCCTGGACCTCTTCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:73
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTTACCATAGACAACGGG
R:
TGAAGAGGTCCAGGGCCTTG
Band lengths:
342-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development