RnoINT0048843 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107042282-107043029:-
Coord C1 exon
chr10:107042896-107043029
Coord A exon
chr10:107042525-107042895
Coord C2 exon
chr10:107042282-107042524
Length
371 bp
Sequences
Splice sites
5' ss Seq
AGGGCTCTT
5' ss Score
-10.11
3' ss Seq
CACCCGGGCCTGAGGCACAGGAA
3' ss Score
-3.74
Exon sequences
Seq C1 exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCATAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTGGCCGAGGATGCGCTGGACGTGGCTGCCGAGAAAGGACACTGGGTCATTCTGCAGGTGAGG
Seq A exon
GCTCTTCGCTACCATGGTCACGTCACTGGGGACGGGACAGAACCTCCCATTGCTGGGGCACCATCTCTATGGCTCTCCAGCACAGAGCCCCTCCAGACACCCTCTTATAGCTCCTAAAGGGGTGCTGGGGACCATGTCGTCTTTGCTCTGAGCCCAGGGGGACAAACAAGGTTGATCCTAAGGCTGAGTTACCCACTGGGAATACTTCTCACCAGTTAGGGTCAACAGGGTGGGCACAGCGGGGTCCACCCGGGCTTGAGGCAGGGCTCTTCAACGGAGTCCACCCGGGCCTGAGACAGGGCTCTTCAACGGGGTCCACCCGGGCCTGAGACAGGGCTCTTCAACGGGATCCACCCGGGCCTGAGGCACAG
Seq C2 exon
GAATCCTTGCCGCAGAACATTCACCTGGTGGCGAGATGGCTGAGTATCCTGGACAAGAAGGTGGAACGCTACAGCTCAGGTAGCCACGAGGACTACCGGGTGTTCATCAGCGCAGAGCCTGCTCCCTCCGTGGAGACACACATCATCCCCCAGGGCATCCTGGAAAACGCCATCAAAATCACCAACGAGCCTCCCACGGGCATGTATGCCAACCTGCACAAGGCGCTGGACCTTTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCATAACGTGTCCCTGGG
R:
CTGAGTGAAAAGGTCCAGCGC
Band lengths:
343-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]