GgaINT1011540 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10093686-10094192:+
Coord C1 exon
chr18:10093686-10093813
Coord A exon
chr18:10093814-10093964
Coord C2 exon
chr18:10093965-10094192
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ACACAGGGTTTGTCTTGCAGAAC
3' ss Score
7.6
Exon sequences
Seq C1 exon
GCAAGAAGCTGAATTTCACCATCGACAACGGGAGGATCCACAACGTCTCGCTGGGGCAGGGCCAGGAGGTGGTGGCGGAGCAGGCGCTGGAGGTGGCAGCAGCACAGGGGCACTGGGTCATCCTGCAG
Seq A exon
GTGGGCACAGCCCCCGATGGCACAGCCATCACCCCACAGCACTGACACTGCCCTAGCGGCGTCCCCAGCCCGAGGTGCAGCTGCCTTCTGCAGAGGTCCAGGGAGGAAATGAATTCCAGGGCACACAGCACACACAGGGTTTGTCTTGCAG
Seq C2 exon
AACATCCACCTGGTGGCCCGCTGGCTGGGCACGCTGGAGAAGCGCATGGAGAGGCACAGCACAGACAGCCACCCCGACTACCGCGTGTTCATGAGCGCCGAGCCGGCCCCCAGCCCCGAGGCACACATCATCCCACAGGGGCTGCTGGAAAATGCCATTAAGATCACCAACGAGCCGCCCACTGGCATGCATGCCAACCTGCACAAAGCCCTCGACCTCTTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:72
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.0=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGGGAGGATCCACAAC
R:
CTGTGGGATGATGTGTGCCTC
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]