MmuINT0052612 @ mm9
Intron Retention
Gene
ENSMUSG00000073514 | Dok6
Description
docking protein 6 [Source:MGI Symbol;Acc:MGI:3639495]
Coordinates
chr18:89584220-89590505:-
Coord C1 exon
chr18:89590367-89590505
Coord A exon
chr18:89584338-89590366
Coord C2 exon
chr18:89584220-89584337
Length
6029 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
ACATTTTCCTTCTCTTTCAGCTG
3' ss Score
12.01
Exon sequences
Seq C1 exon
AATGTGTGACACAGGAGAAGGACTATTCACTTTTCAAACAAGGGAAGGAGAAATGATCTATCAGAAGGTCCACTCTGCAACACTGGCTATAGCTGAGCAGCACGAAAGATTAATGCTAGAAATGGAGCAGAAGGCCCGG
Seq A exon
GTAAGTATCAATCTTATGTAATCTAATGCTTGTGAATGAATATACTAGTCCATTTGTATAATGTATAGTGCCAACCCATGTTCTGTCTCTGTTACCAAACCTGTGAATGAAAATCTCAGCTCTAGAATACCATGCATAATTTAACACAAAATTGTTTTTTGCTAGGACTTAGAAGCCATGCTCTCCATAGATATGTGTGTGACCTGCAGCAAGCACCAAGCCTGGCTTGAATGTGCATACATTCTTAAAGGTATCATTGGTTATAAAAATAAAAGAGTATTGTAAAAACAATTTGTTTTGATATAATTAGTAATTATATATAAATATAATATAAATATAATTATAATTCTAGGGTTTTTTAAATATATTTTTCAAGTTACTTAACTGTAATTTATTAGCACATAATTAAAACATACAGTAGTCACAATCACTGTTTAAAGGGAAATTAAAATAATATTCTATGAAGATCAAATGAAAGACATTGAACAACTTTCACTAAATGACTGTGTAAATCACGTTTTATTTGTTACCTTAGAACAAACTCAGCAAAATGTCTTCTAATTCCTTCCCATTTATCTTGAATAAAATGGAAGATTAAATGTGAGGTGTCCCCTACTGAAAATTAAGCCAAGTCCGTGAGAAACCAATTGTCCATAAACCATCAAACTTCAGAAGGTTGTTTTAATGACTGCAAACAGTGCCAAGCATGGCTGGCTTATTGTCCCTGGAGTCTCTACTTAGATACAATTTTAAAGTTTTATGAACTTGGTAAGAACAAATAGAATGTGGTATTCTCAACTGGAAGTTCTCTGTACATGCTTCTATATTACATAGCTCAATATTTTTCTTTATAATTAGCATATATTTCACATGCTATATTACACTATGTGTTTTTAATTATTGGTATCTTTACAATTGTTAGGTTTTTGGCTTTTCTTTACAGCATTATTCTTAATTCTGTTCTGTCTCAGACATACCAACAAACATGTTGACACATGTTCCTTAAAAGCATTTAACCCATCAGACAGATGTGATAGTTGGTGTTAATTGTTAACTAGATGTAGAGTTACCTGAGAGATAAGTTTGTGGGAGATTTTCTTGATTGTATTAATTGAAGCGGGCCCCCTATCTACTTTGGAAGACACTGTTCCCTGCCTGGGGTCCTGGACTTTACAAATAAAGAAAGTGCAGGACGAGTATAAGCATTCATTTTTCTTCCCTCCAGACTGGTTGTGAGGTGGCCAGCTGCTTCAAGATCCTGTTGTAATTCAATTTCTCACCATGATGTTTGTACCTATGAACTATAAGCCAATCTTTTCTCCTTGAAAAGTTGCTTTTGTCAGAGTACTTCATCATATCAATAGGCAAAGAAACTAAGATATTGACTATCCTTCTCTAGTTTGAGTTATTCTTGTGTACACAAAAACACTTACATACACATGCATGCACACCCATGAATATGTACAGGTTGCTCAGGTCAGTTCATCTCTGTCACACACACACACCCATCCACATTGATTAAAATTTCCATCTTTATTTGGCTTTTGTTCTTTTATAAATCACCTTGACTTAGAGCAAAATTATCTCCTCAGCATCATTGCTTTGTTTGCTCAGTTTTTGCATATAGTACTAGATCTATTTTTATATTGCTCATACACAGATCTCAAAGATAAACAAATAAATAATTTTTTAAATTTTTTGCCTAGATAAGATCTAAGGTATCTTGCGCATACAGGTATACACTTCATTTGTGTATAGATCACTTTGGACCTAAGTCATATTCTTTGGCTTTGCCTTGTGGGCTGTGCTCTCAGGTAGAACACAAACATCTCTACTACTCTTCACACTTGGTTGAGCTGTGACGTGCACTCTTTTCAGACACTAAATAAGCATTTTCTGGTTCATTGCTTGGGCTCTCGGTGAACTAAATGTTATTTTATACAGCTACTACAAAAAAGGAGGTGGCAGAAAGCACTGGCAAGTGTTTCAAGGGTTGAACTATCTGCTCCCTTGTCGAATTGATTTCTGCATCTATGCTGAAGCATTCTTTCTAAATCCTGACACTACTTATGCAATATGAGAATCAGGTGAATTCTGCTTGCTGGAGCATTAATAGTTAAGTATTCTTAAACAATTTCTCACTAGATAAAACACAAAAATCAGCAATACTGCAGATTCTCCCAACAAAGATAACTGGAAAACATGAATCGATGGTGTTTCATTTACTAAAACACTTTAATAGATAGAAATGTTTTTTGTTTATTTTTTTGGTTTATTTTTTCCAACTTAATGAAGCTGGCATTATCTAGCAAAACAAAACAAAACAAGAAACAAAAACAAACAAAAAAAAACCCTCTGTCTTCATCAGACTGCCTAAAGCCAAGTTTGTATGACATTTTCTTGATAAATGCAACAACACCCATGGGCAGGTGATTCTGAATTGTATATGAAAACAGAGTGAGAAAGCCATAGGCAGCGAGTCAGTAAGCAGTGTTCCACCATGACTTCTGCTTTAGTTCCTGCCTTCTGGTTCCTGCCTTGAGTTCCTGCCCTAATTTAACTCAGTGATGAAGAATTTTTAAATGCAATAAATTCTTCTTCCCCAAGTTGCTTTTGGTGTTTTACTCATGGTATTTATCATAGCAGTAGAAAGCCCAACTAAGACAAATGGTCTCATAATTTTTCTTTTACGTATATATGCAAATGTGCATATTTTTTCTATCTTTCTAATATAAATACTATTTTTTGCAACATGGATTTTTATATACTTATTCTAACTACCATAATGTCTTCCAGGTCAATTTTCTTTCAGTTAAAAAATGACCATAGCATTTTAAGACCTATTTTTTTACCTTCAGGCTTAAGGATTATGTCTTTCTATCCTATTGTTGAATTCTGTCACCAAAAGAGGTTTTACAAAAAGTTTAAATTAGAATCAACAGTAGTTTCTAATAAAAGTACTTGAACCATACATGCATTGTCTTAGTCACTATGGCTATCCATTGCCTAATTTTCAACACATTGCTTACAGATAATATGAAAATTTAAAATTATTGGAAAGATCATATTTGAGGACATACAACCTTTTTGTTTGGTTAAAGTCTCCTATCTTAGTCTGGCATGGCAATAAGAAATATTGTAGAGTAAATAGCTTAGCCAGCATAAATTTACACTTTCAGAGTTCTGTAGTCTAAAAGTTCAAAGTCAACACTGAAAAGGTTTACTTTCTTCTGATGTCTCAATGCTTTCTTTGTAGATGTCCATTTCATACTTGTATCATCCCACGGCTTCTTTTTTATGAATATTATTCCATTTAGTGTCCTTTTTTTTTAACATAGGTACCATTCTCTTGGGCTAGGGTTGCATCATGTGGTCTTCTTTATCTTTAGTTAGCCTCTTCAAAGAACTTGCCTTTGGATATGACCCCACTGGGATTTAGTGCTCCAATGCCCTTGGTGAGGACACAGTTCACAGCCATACTTTATAGTAGGAATGGTGATTAATGATGTCCAGGGAAACAATTATAATATACAGAAAAAGATCTGGAAACAGGTCAAAAAATTCCATAACCAACTTTTAGACGCAATGTCTCTTTCTATAAGTAAGTAGAAAGTAAAGGCAAAGAATGAAGAAGTTGAACATGGAAAGCATAGACAGCATGGAGATGGAGCACCATGGCAACAGAAAGTGTGATGCCTCAGATGTTCAGGGAAGGAATTTTCTGATGATTTCCTGGAATTTCTTTTCAACTTTTATCATATGCTTATTTTGTTTCTATTGTGCCCAAGACTAACCATTTAGTATAAAAAATAGTTACCAAAATTAAAATATAGATATAAAATAACTTCTATTAAATTTCATTAATTCTATTTTATGAAAAATAATAAATTATATTAGATTAATAAAAGAATAAAGATTAGACAATAAACAAAACTATGATTAATATGAATTCCGTTTAGTTGATGTTATTAATGAGCACCGCCGGTATCAATTAAATAAAGATTTATGTGCTTAATTCCTTTTGTTATATGAGAAGTTGGCTTCCTTTCTCAATAGTGCCACCATAAAATGAAACCTGATTCTACTCCTATACAGTAATAGGAGATGAAATTTATCTACACAGCACATTTGATGGTATCTACACATGAATCACCCACTCATAGCTGTTTCCTAGCTCTCAGGGCTACAGCAGAACTGGACATGTCTATTCATAAAAAAGATACTGCAGGTGCAAAAAACTCTACTTAATCCCAGCACAAAAAACAAACAAACAAACAAAAACCACAATCTGTTTTCCTTCACACTCCTATATATACCAACATATATATAAGGTGGGAGTGAGAGCATGAGAACTGTGTAAATAGGAAAGAGAATTGAAAGTATCGTTTGAGATACATGAGAATCAGCTACAAAATTGGTCTGGTAGCAAACTTTCCATAAACTGAGTGTGTTTATCTTGTACAAGATAGCAAATTCAAATTACTTCAAATTTCAAGGTCCAGTGTGATAACATTTTATGAAGCTTTTATAGGAATAGAAGAAAGTACAGCATAAATTAAGACATTTTGCAAATACTGTAGTGGAAATTTCATGTGGAAAAATTACAGCAAAACAGAGGTGTCTCTGGTATAGACCTCAGAAGTTATCTAATGGCATTGTTAGCCTTTGTGATGGCATAACTAAGGCATCTGTTTATATGTTGCTCAGGTTATGTTAAAGTAACATATTCAAATACCAAATGAACATTTCTGTACCTTTTTGTTACTCATTTTTTTTGAATGATGTAATTAGCTAACCTCAAAAGCAATATATTCAAATTTTAGTTCTCTTATCACGGAGATTCCGAGAGAATATTCATTCAGTATGTGCAAAAGAATGGAATGATGCAGTAAAAGAAAGCAGCTCTGCACAAAGGTGTGAGGAAGTGTTAGGGAGAGTCTGAAAATGACTCTCTCACAATTGTCACCTTTTCTTGGATGTGTCACTCTGACAGCCTGCTCCTTCATGCCTTGAATTATTTTGCCATCCTATACATTGAAAAATGCTGTGGGCAATGTAAATAATTCTCAACCATTGAAATGCAAGCTAGTTCAAAGTGGCTTGTGAATGATTTTCCCTTGGGTATTTGCCAGTGTTCTTTCTCTTTTGGCAAGAATCCATTGCGATTCTTAATGCACCTGTCAATGAGTCAGATACATTTCTTAACAAATATTCTTCTCATATATTTTTCTTTTGTTTTCATATGTGTCTTAATGTTTATATATATTTATAGTACCACATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATACATATGTGACAGGGTGAACACCTGTCTATGGAGACCAAAGGGCTAGCAGGTGTCCTGCTTTATCACACGTATCTACTTGGGACAGGGATGCTTACTGAACCTGGAGAAAATAGCAGACTAAAAGACTTCATTATCTTGCCCAAGTGTTCATCCCCAAATAACTGGGTTTACAGGAACTTACCTAGCTATTCAGCTTTTTAAGCAGGAGCTTGGTGTCATTCTTGTGCAGCATGGTCTTTTACCCATTTAGATATTTCCTTTCTCCCTGCTACCTTTCATACTTTTCTATATGTCTCCTTATTTTCAATAATTTCATACATTTGTAGAATGAAATATGATCATATCTACTCCATTCCCTCCTCTAAATCTTTCCATATACACCCTGCATGCCCTTTTCCAATGTTCTTTCCCACCTCTGTCTCGCTACTCCCCCCCCCTCTATTTCTCTCTTTCTCATGAAGTCTTCTTTATGCTGTCTATATGTGTACATCTGAACCATCCACTGAATCATGGCAAACAATATCAGAGGCAATTTCGCTTTTGACACAGCTATCCTTGAATAGGGAATTATCTGGGTATCTTTAACATATTCTGTTTTCTGTCACTCACACTTAATCCATGCCATTTTAAAGGGTTGATTGAGTTTGATATCTCTAAGAAGGCCTAAGAAACATTTTCCTTCTCTTTCAG
Seq C2 exon
CTGCAGACAAGCTTGACTGAGCCGATGACGTTATCGAAATCCATCTCTCTTCCTCGGAGTGCATACTGGCATCACATTACACGTCAGAACAGTGTTGGGGAAATCTACAGCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073514-Dok6:NM_001039173:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0217412=IRS=PD(32.7=68.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: