MmuINT0060443 @ mm9
Intron Retention
Gene
ENSMUSG00000037962 | Fam101a
Description
family with sequence similarity 101, member A [Source:MGI Symbol;Acc:MGI:1920371]
Coordinates
chr5:125483845-125490851:+
Coord C1 exon
chr5:125483845-125484108
Coord A exon
chr5:125484109-125490741
Coord C2 exon
chr5:125490742-125490851
Length
6633 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TCTGCCATGTCTCCTCCTAGGCT
3' ss Score
9.26
Exon sequences
Seq C1 exon
TGGAGCCACAGGCCGGAGCCTCCTTGTTGCTCCTCTGGCTCAGTGGTGGCGGGGACCCGAGCTGCTGGGGCCCACGCCCCGCGCCCGCCAGTCATGGTGGGTCACCTGCATCTGCAGGCCATGGGGGACACGCGGGAGCAGAGCCGCGACGGCTTGCTGGACAGTCCCGATTCAGGACTGCCCCCCAGTCCCAGTCCTAGCCCGCCCTTCTACGCCCTGTCGCCAGGCACCCTGGACACCCGGACCACCACTGAAGCTCCAGCG
Seq A exon
GTAAGACCTGGGAATTGGGCAGTGGGAGGGCCGTTCAGAAGCCAGCATGGTCTCATCCCTCTTCTGAGGCAGACGTGGAGTGGCACCCGACTCACCAGGACCTGTAGGCTGGAAGTTTCGGGGTGATTGCTGTCAGGCAGGAATACAGAGTAGTATCCCGATGCCCCAAACTCTACAGACTTACAAGGGGGGCCTGTTGTGGCTATCTGTCCGTGGGTCCCGTCGCTGCTGCCACCGCCTCCTACCTTATTGACCTCCCAGGGCTTCTCAATGGAGGCATTTTTTGCAAACCCAGCTCGGGTCGAGAGCCTCCGTAGGTTTCGTCTTATAGGTGTAGAAGTGGAACTGTCCCCGGAGCTGGGACTCTAGGGGTTGGACACTCTGCCCAGGTTGCTCTGGCGACGGGGCAGAGGGAGCAACTTGAAGAAAGGAGTGGTGGAACAGAGCAGAGGTTGAACATGGCCCTGTGGCTTGATGGCCTCGGCCGGGTGTGTTAAGGACTCTCCCGCCAAGGTGTGCGTGCAGGGCGGCGCTGGAAGCATTTGAGGCTCCAAGCCACGTCCAGCATCCTCCTCCAGACATTTGACCCGATCCAGGGCACAATGTGGTTGTCGGAACTTTTCTTTAAATCTCCCCAGGTGACTCAAACATGCAAGGAAGTTTGAAGCCTGTCTTGAATTGAACTTCTGTGTCTCTTTTGGGAGGGTGGGTGGAGCAATCAAGGACTTTAGAAGTTAATATAATCGAGCAATGCTGTTCTTAGGGAGGGGGGAAAAAACTAGGAACCTCAATATGGATGTGATGGGGGAAGAAATTCCAGGGAACATTTTTGGGGATGGAAAGAAGGCACCAGGAAGAGGTCGCTTCGATTCCCTGTGACCCCGAAGCCTCCTTCTGCAGGGCATTCAGGATACTTCCCATGCCTTCTGGGTCAGCCAGAGGCAGTAGTGAGAATAGCTCTGCTGCTGTTACTGCTGCCTTTCCTGGCTAAGTAGGCGCCAGCTATGGAGCTATACTGCCCTGGTCTGTGACTTTGTCTGGGCAGGGAAGCCTGGGGGCTATTACTCAACGACACCTGGTAGATGACATTTCCCTCAAGCCAGGGATGGGTCTCCCCACTTCTGTTTAGTCCTCACAGTCTGTGAATGCTTGCTTGCTTGCTTGCCTTTGTTCCTCATGTTCTGGAGTCAGTCGAGGCGCAGAGATGGTTAGGAAGTTACCCAAAGTTGCCCAGCAGAATTGACCCCAGGAACCTGGCTCCAGTGCACATTTAAATCTGCCCTGGTTTTCACTGTGTAGTGCGTTAACGGCTTCTTGACTATTTAAGCAGAGAAATTAAATGTGTAGCCATAGGGTCCAGGTCATCAAGAGAGGAGGTAGTAGCCATGGCAACCCCTCCTCAGGTTTGGGGGTCCAGTTGTGGCCCCGCCCACTTGCCTATCTACCAGTTCCTACCCACAAGGGTCCCCACCTTCTTGAGTTCCATTCCTTCCCTACTGTATCATCTAAGTGCCAGCATCCTGGTCCCCTCTGAGGCCCTAACTCTGAGGCCTAGGTATAGGCAGGCTGACAGTTGCCAATCAACTGGTTGGTCTACTGTGTGGGATAAAAGAAGGATGCCCACATCTTGGGGAGCCAGTTTCAACTGGAAGAAGCTATTGGAAGGTGGTCAGGTGTCCCCTGGTGTCCTTACATAGCACCATCGTACTAGTGGGGAGCTACGGTCACCTTCACTGTGTGACACGGAGCCAGGAGTGAATGGCTACCATGTATGTAAGATTGACTGCTACAGACAGTCAGGGAATGACGCTGCAGAAGCCAAGGGTAAATCAGGGAGTGGATTTTAGGCAGATGGGGCGACAAACTTGTCTCAGTCTAAGAGGACGGCACATGCCAATGTCCTGTGGTAGAGCTTTAGAGAAGAGGAGGAGAATCTGGGCCAGGCTCTGCTAGGCTGAGGCTGAAAGCTAATGCTTTGTTTTTGTTTTGTTTTGTTTTTTAAAAAAACAGTACCATGAGCGCCCAGGACCCCCAAATTAGAAGCCTCTTTCAGAGATGTAACTGGAAAGTAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGTTGCCCTCCCACGTGGCCCCAGGAGAGCAAGATGTATTGGCTGGAATGGGGGCTGTTTGCCTGCCACCTTCACCCCAAGAATGCTCAGCCGTCCAGGCAGGACTGAGACGAAAGCAAACTGACCCTGGCTCTGCCACCCTGGTCTCCCAAGTTGGATTTCTGTGCCAGATGATAAACACCAGGTGCCCCCGCCCCCAATACTTCCATCACAGAGCTGTGGTGTGTGGGGCAGACATGGCGGGAAGCCAGGTCCTGCTGGCTGAGAACAGGTCTGTGTCAGAAACAGGCTCCAAACACTAGACAAGCAGTTTGGGCACTGCCCCCTCCCCTGCCCCCGGGCACCCCTCCTCATCTAGTTTTATGGCCCACAGGGGACTATGGGTGACTTTTGGGATCTGACCAGGGCAGCTCTCTAGGTATTTGCTTAGACCACAGCCCCTTCTATATGTGTGTGGGGTGGGGTGGGGGCGGGGCTCACTGTTGAATGACAGGGGGTGACAAGAAGCAGAGTGGGTTAGACTCTGCCTCCCCAGGGTCTCCTGGTTGATTCATAAGAAAACCTGGCTTCAGGACAGGATAGAGAGCTGCTGATGACAGGCTGGACTATCAGGAAGGGCTGTTCCCTCCCACCTCCCCCCGAGTGGGCCCTGGTCCAAGCGGAGAGGGAGGGGCATGGTAGATATGACTACTTTGGGGGCCTTCTGATGTGTTTTATAAAAATGAAAAAAGAGCCAAGGGTATGTTTGGTGGAGCAAAGAAGTATGTTGAGGTGGGAAGAGTGCCTCTGCGAGCCCATGCTGAGGCATCCCTTCCCACTGAGGGACCAGCCACAATGGGTATAGTGTAGAATAGAGTTTATTTAGGGCGTGGGAGTTGAGAAGGGAGGAGAGAGGTGGGGGGAGGCTGGCCAGGAACATGTGGAGAGGGAGGGGATGGGGAATGGAGAGAGAAGGGGCAGAGGGTAAAAGGGACCCAACAAGCCCCTTCGATAGTAAGCCGGGCAATAGCTGGCTGTTGCCAGGTAACTTTCTACGAGGGCTGGTGCCCAGAGTCAGGAAGGATGGATGGATAGACAGTGGATAGATGGACAGATTGAAGGAAAAACAAGCAGGCAGATGGATGGATGGACAGTGGAGGGGCCTGGAGGACAAGGCTCAGTAGACCCGTGGCCAGGGCGAGGTGTCTGTATGGACTCCTGTGGAAGGGAGCCAGTGTGTGGGGTGGGTGGAGGAGTCTGTTTGCAGAGGGAGTTGGGGAGGCAGGCAGATCTGCCAGGGCCTCCTTCCAGCCAGGCCTGTTTAACCTCAGTGGTGGCTTGGTCTTCGGTGGATTGCCAGCTGGTCCTCACAACCCCGGCCCCATGGCCCCATGGTTAGGGCACCTGCTAGGAAGAGCCTCACGTGGAACTTCAGTCTGGGGACCCCACAAGCAGCCATCTTCTGGGGAAAGCACTACAGATAGGGCCAGTTGGGATGGCTGCCTCTAAGGTGCCAGAGTGGCTTAGAGCAGAGGCCGCTCTCTCGTGGATCTGGAGGCCATACTACCAGAATCAAGGCCCGAGTTAGGATCCCTCTGGACTAGCGAAGACCATCCCTGGCTTCTGGTGGTAATCTGTATGTCCAGTGACACATCTGTGGTTCCTTGTGGCAAGGTGTGGCTTTTGGTGGGAGCCCTTGGCTATGGCATTGGGGTACTCTGTGGCGTGCTGAGATACAGTGGCAATATCTGCCGCCATCTTCATCTGACTCTGTTCTGATGTCCCTGTCTAAGGACACTAGTCAGTCAGTGGCTACCTCACACCTGTAGAGATCCCCATGGCTGTTCTAGCCACAGCATGGGGTTCGGGACTCAACTGTCCTTGTGGGGACCATCAATATCACAAGTCTTTCTGGCTTGCTGTGGGGACCCATCGTGGTAGCCTCTCCCTCCAATTGCACAGCTCTGTGGCTATTTCTGTGGTCCCCAGCTGCCACCATTAACAGCCCCTGCCATCTGCAGGGAGGACAGGGATTTGGGCTGTTACGGTCCCTCCTTGCTTCATTTCCTCCTGGGCCGAGGTAGACTTATCAACCAAGCCTGTCCCACACATATTCAAAATGCAGCTAAAACCAACCAGGGTTTAATTCCAGCACTTGGGAGGGTGAGGCAGGAGTACAGCTGGAAGTTCCAGGCCAGCCTGGTCTATAGGATGAGACTTCAGTTAAAACAAACCAGAAGTTGCCAAGGGTGTCTTTGACTCCCTTGCAAAGTCTCCATGTAGCATTGTGGGTGAGGGTGGGAGTGGGAGTGGGAGGGGTCCCTCCAGCAGCAGCCAGTGGGGCCATGCCCCTCCATCACCAAGGTGCTTATTGGTCTAATGATTTACATGGGCTACATGGGACACTGTTTTGGCCTTGTGGCTGTACCCCCTCTGTGTGTCTTGGTTCAGCTGGGCCAGACTGCCCCCAGGTGGGGGCAGTCTCTGGGTGGCACCTCGCTCTCTGCCATACTGTGTTATCGCTCCCTGTGGCTTTGGTTTTTCCCAGGGTGCCAAACCCCATGGCTCCAGTCAGCCAGTGAGCGGTGTTTACCATCATTGGGCTGGGCAGTGAGTGGTTCATTATGTTCAAAGGAACCTCGGCCCTTTGACCTGCTGAGACCAGCTCTGGTCTCCACCTCACCCCTGTCTGACCAGTCAGCTGCCCTGGCTGCCCATGGCTCTCTGCACTCAGGAAAGGACAAGGCTGGGGTCAGGGCCAGCTGGGGAAGGGGGAGTCCGCTAGGATTGGTAGGTGCCAGCTGGGGAAGGGGGAGTCCGCTAGGATTGGTAGGTGCCCCCAGACCTTTCTCCCCCTCTATCTTGATGTCCCAGAGCTGCAAGGGGGACAATGAAATCCCCGGGAACTGGACATCCTTCAGTCCCCAGTGTGGATGGCATCACAGTTGGCACACTTGCGGTCACGGATGCACACCGAGGCCCTGCCAGCCGCAGCTGGAGGTCTCAGTCACCTTATGTGTATGTGTACCATGTCTGGTACCCACAGAGACCAGCAGGGTGCATCCATCCCCTGGAACTTGAGTTAGGTGTTTGAGTTACCACATGGATGCTGGGAACTGAACCCAGGTCTTCTGCAAAAGCAGTACGTGTCCTTAACCACTGAACCATCCTGCAGCCCCTTGGAGAATCTCTTTGGACTTAAAACAGGGCTCCTGAACCCTGGGTGGCCACCTGCCTGGGATTTTCTGTGCCCTAGTGAGGCACAGTGAGGCAGATACGGTGATGTGAAGACTCCAGTGTTGACAGAGCCTGGAGCTATGGTGGCCCACACTGCATGTGGCCTGGGTGATAGTGCCCTACCACCATGTCACTATGGAACGATACCCAACCTCTGGGTGGGAGCACTGTTTCTTGCCCAATGCAGTTGAGCTCTTCCTGTGGGCTCTGTGAGATAGCCAGTTCTGTAGCCTGTAGGGTGAGACATTCTCAAAATAACTCTTCGCCAGGGTTTGGACTGCAGAAATCTCCTACAGGGAGTAGCTAGTGGCTGCCACCCACTTCCCTTGGTATCTGTCCCTGGAATCCAACGGGACATGTCCAGCCTCCCTGCCCCATTCCTTAACCCAGTGGACACCTGGGCTCTGTCCTATCTCATGAGGCCTGCAGCCTCCCTGTGGGTGGCTGTGCTGTTTTTCCAGTGGTAACCTTTGGAGAGCTGGCTCCTTCCACTTGAATTGCACTGTCTGTCTGTCTGTCTGGCAGAGTCCTGCACAACCTCCGGCTGGATTGGGGCTGCTGCTGCAGGTTGGTCAAGGCTCGGGACACGGCCCCAAGAGGTGCTGGGTTCCAATTTTTTACCTCTCGGTCTGTCTTGAGGTTCTCATGTATCCAAAGATGGCCCTGAACTCTATGTTCCTGAAGATGCCCTTAAATTCCAATTCTCCTGATTGTACCTTCTGCCTGCTGGGCTTGCCGGCCCCTGTTTATGGGGTTCTGGAAGTAGGGGCCTAATGCATGGTAGGCAAGCATTCTAATGCCTGAGCGAAGACACTGAGCCCATAAGCCAAAGAGGAGCAGTGGGCAGGGGATATGCATCCAAATGCATACATCTAAAGCCTTCGTCCCTGTTCACATCCTTCCTCCTCTAAGGCCACATGGGACCTGGTGCTGTGCCCAGGGTACAGTAGCGAACCAGCAGACTTACCTGGTGCATTTGGGGGAAACACCAATCCACAAACAGCCTCTCTAGTGTTAATTTCCATAAGCACCTCAGCTGGGAGGTTGGTGGCATGGATCAGTGCTGATGTCTCTGGATCCTGAGGCTGCATGGCGTCCCATGGGAGACAGGTGCCTCCACCTGACTCAGACAGTTTACATTAATCTCACCTAGGGTGCTGGTGCATGAAGACGGTCATGCCCCGCCCTCACAGGGTCATGCACAGGCATGTGGGTACACATGTCTGTCTGCCTCCCCACTCCCATCCTCAGTACTGTGGGTAATATGCAAATAGATATTCCCCTCGCCTCTGCCATGTCTCCTCCTAG
Seq C2 exon
GCTCCTTCCCTCTTCCAAACTCCCCCAGCTCTGGAGATGAGGTCACGGTTGCTGCCTGTGTTCTTTGGGGAGAGCATCGAGGTGGACCCAGAACCCGCACATGAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037962-Fam101a:NM_028443:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(29.2=98.2)
A:
NA
C2:
PF150681=FAM101=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: