GgaINT0005494 @ galGal3
Intron Retention
Gene
ENSGALG00000003137 | FAM101A
Description
NA
Coordinates
chr15:4779336-4788291:-
Coord C1 exon
chr15:4788097-4788291
Coord A exon
chr15:4779446-4788096
Coord C2 exon
chr15:4779336-4779445
Length
8651 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
AGCACTGTTCCTCCCTGCAGATG
3' ss Score
11.77
Exon sequences
Seq C1 exon
ATGGTAGGGCACCTCCAGCTGCAAGGGATGGACGAGAGCCTGAAGGAGAAGAGCCGGGAAGGCTTGCTGGACAGCCCGGACTCGGGGCTGCCCCCCAGCCCCAGCCCCCCTTTCTACTCCCTCTCGCCCGGGGGCGGCGGCGGCGCGGACCCCTCGGCCTCGGGGCAGCGGCGAGAGGCCAAGGACGGCAGAGGG
Seq A exon
GTAAGAGCAGAAGCGATGGTGGGAGAGGGGGGAGAGGGATTTGAAGGACGGTGGAACTTCACCCCAGGGGCCTTTCGGGTTTCTTTGACGTATCAAAGACGTTTGAAGCGTATTGCACACAGCTAACTGGCTTCCATGCAAAATAAAAGCTGTCAGCAACACTGAGATTGCCGTGGAGAAAGTTCATCTACCTGTGCAATAGCGACTGCTCACACTTCTTCCCAGAAGAGACTCTCTGCAGTGACTTACCGTGCCCCCATTTTCTTTCTCAAGTTCTAAGGCTATTTTTGCATATGAATCAAAACTGCCTTCTGCTGTCAGGTATGCCAGAACCATCCCCAAGAACAACATCTCAGCAGAGCGCGGTGGGGAGGGTGTGAGATGTTACACAGGGAAATCAAATCCAAAGCCCACTAACAGCCTCTCACCGCCACGCAGCCTTACCTGCAGGCGCCTGGGTGCACGCCGTCTGATGGGGCTGTGTGCTCGGTTACCCACGTTCCTCTGGTTTGGAGGCATCAGGCCGTTGCTACATGTCTGTAAAATAAAACGTGGGAGGAAAATGAATGAACGCTTGCTGGGTCAGAACACAGCTGGAGTGGAGGTGTGTGCGGAGGTCAGCAATGGGGGTGTGATGGCCTCCATTCCAGCCATCGTGACAGCCGGCCACCACTGCTCCCAAGAAAGCCCCTAGATATTGGAGATGAAAGAGGGTAAGAAAAAGCTCTTCTAGCTCTTGGTCTGATAGGACTGAGAGTTTTAGTGCTCCTGCAGGGGGAGAAAAGTAGTTATTCCAGTGATCTACATAAAGCAAAATTACATTTTCAAGTTATTTTTTTCTGTGAACACAAACAAACATTTTAAACATTTCTGAGGAACAGCTTAGGTTTTATCTTCTGATTTTTTTTTTTAATATCATACTTCAACAGTGTGGGCAGCCCCGGGCTCCTGCGGTTAGCAGATGGGTGCCACATACTGCAGATATTTCTGTGTGTTTAGTAGGTACAGAGGACTAAAAGATACTGATACTGAAACTAATTAGACTGCTTTAATTGGACTGGTGCAGGACTGTACTCTCTAACTCTGCCCGTTTGGTATATGGGACTGGCAGGAATTTTTACTCGACTGCACAGTTTCACTTCCAGTTTCCAACAGTCTACTTGCAGCTGTTAAGAAAACAGGAGAAATACGGGGAGCATTTCAGTGTCTAATTAGCTTTAATCTTACCATTTAACAAGGACTTTCAGATCTATAAGCAATTACACAATCTGTGAATGTGTTTAACTCCACTACTCTGCTGTTCATCAGAGCATGCAGAGTTGGCAAATAATTGCAGCTATGTGCACACCAACACATGGGTTCTTTTAATCACTTATTGTATTAGTGCTCGTTTTGCTTACGGATGTGACAGAACCAGGAATGCAGTCTGCATTCTTTGTGGTATAATACTATAAAGCCATATATAAGCTCAGTTACTAATGGCCAATGTTCTAGTACGTACAGTTACAATAAATTGCTGTCAGGTGAAGAAAACAACATTCCAGATCTGTGGGAAGGATTTCATACTGCTCCTTGCTGCAGACCTATCAAAACCACCAGGCTGAACCCAGTCGCGTTCTTTTGCAGTCGGCTGCTTTGCTCTAACTTCACAAATATGCTGCAGGATTTTTCTGCTCTAGGAGAGCTCTTCTCATGCAGGCTAAAAGGAGATTGCATGCTCGTATCGAAGACTTCCTTGTGTGTAAAATCCATGCTCTCCCTGCTTTGTGTCATTAACTGTGACTCTGAAAAAGTAAACTCCTTTCTCTTTAATAAGTATGACTTTGTTTCAAAGACAATGCAGCATTTATTCCCATTTAACCAGCCAATTTGGCTACAGCTTTGGGATCCAAGAAAATATGAAAGGCAATTTGGGGCCAGAGTCATAAATACCACAAGTTCAACACCATTTAGGGACCTTTTCTTTTTTTCTTCTTGCGTTTTACTTGCAGTGCAGGAGAAATTGGCTTTTACTTATTCAAATAAAACCCACGTAGGGAATTTGTTAATTGTTTTCTGCTGAAATGCAAATATCCTAAAGAAAATAGAAGGTGACTTTTACCTAGTTCTGCCCTTTAAATCTGAAACATGATTAAATTGCTTCTTAAGACTGAATTCCCTAGGCTTTGCTTGTAATGCTGGGCCAAAAGGAACATACATACAATGAAATAAATCTCTAATAATGCACACAAAGAAGCGGTTGCTGGAAGGGCAGGGAATGAAATCACACCAAGGTAGCCAGATCTGCTTAGAGTTTTCCCTGTTGTTGTTGCCCATGTGTATAGTTTTAGGCCAGAAGGACCGATTGTGAGCTCTTGCTAATGCTGCACTGAAATAAGTGCTTAGCATTCAATAGTATTGCTCCACAAGGATATAAAAGGAGATCAGAACCACATTCTTCTGCAGAACCATCCATCGTGACTTCTTGAAGCAGCATACTTCTTGTCCTCTCCCACTGCTGTTGCCTCTGCAACAAATTCAGTTTTATTTGAAAAACTAAACATTTATGAGTTCAACTTGCCTCGCTGAGTGCTGACTTCAGTGGGACTATCCCAGTGGATGGGCTGTCAGATAAATGCCCCCATGTAGGGAATTCCTACTTACATTGTTGACAGGAGTGCAATATTAGAATCAATCTTATGGGAGAAGATTCTAGCTTCATCTTTAGCACTGTGGAGGAGTGTTCTTTGCCCCTTAGTGTAGACTTCATGGGTATGGTTCCATCAATGGAGTCCAGGTTAGCTTGTGTGCCTTCTTCCTTAATTGCCACATATTGAAGAACTCTTGGGGCCACAGAGACTGCGTTTTGCTCTACGCTGAAAGAGCTTCAGGCAAGGGGGCTGTCTTCTGGGGACTGGGTGGGGAACGTAGCCATCAAAATGTTTCCATGCAATACGTGACTCGCAGACCTGCCGACACCCCCAGTGAAAGCACATGTGAGAAACACCCCAACCTGAGCCAGCTCGCAGCCTGCGTGCAAAGCAGGTGACGTCTTTTTAACTCCACATGGGCTCCAGCAACTTAGGAAGCCTCCGGGCTTGTCTGGAGAGCAAGGCACCCATCTGGCACAGCAGCATAGCTTGCCTTGGAGCTTGGCATTTGCCGCCTGGCATCCTGACCCACTTCTGAACCACTCCCACACGGTGAGATCCTGCAGGAATTCCCCTGGCAGATGTTGACAGTGGTTTCACCTCTTGCCTGCTGGTCGCCATGTCTGCAGCCTGGAAAACTGTAACCACAGCTGGCTTTTCTCTGTACCTTGGCCCATCTGGTTCTGAATGTGCTCCCACTTCTCTTCCTCCTTGGTTCAACATCAGCAGCGAAGGAGAGGGAAGAGAGGAATGGCAGTGGGCCTCACCTAATCTGCAGGCTGTGACCTTCTAGGCAGATCAAGGTCTGGTTCCTCTAAGACCCACCTGATCCTGGCTCCAGCCTGTTCTGACAGAGCTGCTGCCATGCAGTAGTTAATGGCTCAGTCCTCCCAAATGGAGGAAGGAGTGTCAGTGGGGTGCAGCATGCATTGCTAGCACCAAGTAGAAGTGTTTCTCCAGGGACTGGCGTGCAAATATGTGTAACTGCATTGAAACTGCACTGTTGGCACAGTGCCTTCTGCCACAGAGTGTCTCTGAATGCTGTGGAAATGAGATGGGACTGGGCAAATCTTTCAGCAAGCATCAGTCTGTGTTATCAGTGGAATTAGTAGAGAAAAGGTTGTGTAGTTAGTAGTTAACACACAAGTTAGTGTGCTCACCTCTGTGACAGTCACGGGGATGGGCAGGCATGTGGTCTTGATTCAGGCAGTTTGTGATAAAGGCAAGCAGGGAAAAAGTCATAGGAGTCTCATCATCAATCCTAAAAAAATGTGGCTATATCTAGGCTGGTATCTTCTAGCTGTTTAATTTCAGTTGCATCTGTATGTAACACTTGGCAATAAGCAAAGTAGTACATTTCCCACTTGAAATAGAAGAGGAGACAGGCAGGAAGGATTAATTCTTTGAAGTAATAAAGCCCTGCTTTATACCTGAGGTTTGCATTTACTGTTATCACTTCCAAATAAAATCTCATCCGGCTCTACTATAAATTACTTGTAATATGCAATACATGGGAAAATAAATGGCCTGTTAAACAAATACTGCTTATCAGCTAGAGCGGAGAATGTAGATGTGTGTCAAATAATTCAACTGGATCTTTCATTACAGCTGTAAATAACAGCTGAGTAAAGTGACATTTTCATGGACCTGACATGTTGCCATAGTGGGAAAATGTGGTGAGAGATTTGCTTATGCCCTAGCTAAGTCAGGAGCTGGGAATTTGGAAAGCTGTATCCTGTTTATTGCCTTGGTGCCTGGAAAATTGTTTCCCCCTACAGTCCCTAGGGAGCTAACGCCAAATCCTAGTGCCTTCCACATAATGACCATAGCTAAAGAAGTCAGTCTGTTCTGATCTGTCTTGCTTTCTGGGGAGAGGTTTTTTGGAGTTTATATTTTTCAAGTCACATTAATTTCCTTCCTTCCTTGTTGCTTTGCTGCCTGAAGTCTGGAAGCTACAGGAACAGTCAGGGCCAATTTCATGGCACTTTATTTACCGTAACTCTGCTTCTATTCCTTTAAAATACCCAAGTGAAAAGCACCTTAACAGAACCCGCTAACTCAAATTAATTATTAGGTGTAAAATAAGATTTTTCTGCCTACTGTATTCTTTTTGCTGTTGCTTAGGGACTCTGAGGTCTGAATGCCCCCAGGATCCAAGCACTGATTTGTCACTTCTGGCAGGTATGAAGCAGTGACATGAAACTGAAAGGCATGCATGAGTTCTAAAGCAAGAAGTCCCCCACAGTACTTATGTTAGCATAAAAGCAGCACACTTGGTCAGCAGTAGACTGAATTCCCTTCAGTAAATTATTTTTGGGGGTGTATTTATTTATGTACTGCTTGAAAAAAGAACATAGCTGCCCAGGCCTTTACATGCCCGAAAGGCATCAGAGGTAAGGCAGAGGGAAAAATGCAGCCAAACAAGAAATCACTTCAGCATTTTAATACTACTTTAACCCTTTGCTGGTTAAGACAGATTAATTAGGTCCTAGCTGTAGTCTTCCAGCTAAGCAATCCTAGGGTTTCTTTGGATAGACAGACCTTGACTTATGGATTGCTTGTGGGCAGCCTACTCTAAAGCCATGGGTTTCTCCTCTCTGTCATCAACAAACTCTGCTCAATTCAGCCCATCTGTGGTGGGGGGCTGGAAAGAAACTCACCTTATTTCCAAAGTGTCTTGAGATTGCTGAGTGATTGATAGAAATGAGCCAAAGCTCATCATTTTCTCTATGGAGGTCAGAAGTCCAATGTTTCTGTTCTTTCAACCATTCCTGTACAGAAGGAAAAATAACTGAGTACTTTTTTTTTTCTTTTTTTTTTTTTGACAAGCAGAACATTTTTGCTTTGTTTCTACCTTAAAATAGATTGGAAGAAGAGGGTGTCAAACTGTTGCCAAAAAGCCAGCTTTTGGCACGTGTCAAGCATATAACATTTCAGCCCCAAAGACACATCTTTTGGAAAGCTCGGGTGCGCTGTTACTTGCTTCCAAACTCCACGTGAGATTCAGGAGCAGGTATTTCAGAACATCACCAGAGGCAGAACAAGAAGTCACCTAAAGTTCCTTTCAGTTCCTGCTGTGTAAAATCTGTGCTCACTGTTTAGTGACCCTTTCACTCTGTACAAGCGATGCGGTTGCTTGGTGAGCAGACTGCAGGGTCTTACAGCTGATCTCTATTTTTAGAGCATGCTTTTTAAATTATTTAAGTCTTCAATGTGCAGAATTCTGGGTGACTTTCCCACATGCAGCAGCTCATGGCACTGCTTGTGGTAGATAAGTGTGAATTCATAATGGTCTCTGGTGGGCGGTAGAAATCTCCGGTCTGCAGTCGTCCCAGATGTCTGAACTAATAAAGCCTCACCTGCAGATCTGAAGTTAATGCTAGTTGTATGAAATGCATTATTCTCACTTTTAGCCTTCCCTGCCTAAGTCTAGGTGAGCTAACCTACAGTGCAAATAGTCTCATCACCACTCCGTTCAGATCTGACTTGGAGAGAAGTTAATCCAAATGTCACCAAATTCAGTGGCAACTTTTGGACTCTGGTTTCAGTCATGCATGACCCATCTCCTCCATGCAGATGGGTATTGTTTCTGCAGCATGTTCTTGTTTCCTGTTCCCTGCTGCGGGACTTGGGATTTCAACAGACAGTGTTGGCCTCTGTGCCCTTGTTCTGACTGAGCAGCAGAACGCTGGGGGTCACATGCCCCAGGAATATTCCCACTAAGCCACAGGAAGGACACTGCCTCCTGCATCCTTGTCTCCAGGGACATTCAGAGCACGCTTAGTGTCAGCATATGTTAGCAATAGGTGTGAAGGTTTGTTTCCCTGGGAGCACGGAAATTAGTTCTTTCCAATTATTTCTTTAATACAGCACTTTGCAGAACTCTTTAATACCAGGATTTCCTTTGTGCTACTCTAGCAAGGATGCTCCTTTTTCTTTTTTTTCCCCACACCCATTCAGGCTTTGTTCTTTTTGACAGTGGAACAGAAATAGTTGAAACGAAGGGTTAGCCATTTAACATTACAGTTTAACACCATAGTAGAGTGCAGGGATGTCTCAGTATGGAAAGAGTAAACAGCTTTGTGGCTTTGGGACACAGAATTGAAGGGCTTGGAGAAAATTCAGATGAAGCAATGACATTTTTTGCTTTAGCCTCAGGCAGAAAACCCAAGCCACCAGAGAAAACCAGACCTTAGACAGTGTGAGCTGATGCTATTGAGTGGGCTCAGGGCACTTTTGCCAGTTGACACCGGCTGAGGGATGAGCTGGGGAACACTGCAGGCATCTGCATAGGGTACAGGACAGGGCACAAGTTCGAGTACCTTGCCCAGCACTGGAAGCAGGGACTGGACCACAGCTCCAGTGTTGCTCCTGTACCTTCCATCCAGAAGGTTCTGGGGAGGGCAGAGGGAAGTGACATGGGAAGAGCAAGCCAGTTTCTCTGTATCTTCAGCTACCTTCAGTGGTACCATGAGTCCCGAGATTATCTGACTGACCAAGACACTGATGAAAAATGACTGATTGCAGCACACATGGCTTATGCATGGTGGAAAGTGGAAAAACTATGAGCTTTTAAGTCACCTAGAAACCTTTCAGCCCTGGCCAGTGGCTGCCAGCCATGTCCTTTAAAGAGACCCTGTGCGTCATAAATTGCTGCTGACAGAGAAGTGGCAGGGACCAAAACCCACAATGACATTTTTCCAGGATTAGGCTTAATTAGCTTCTGGGCTGGGTCTAGAGACAGGATCCCTATATGTGAGAACTGATATCTGAGGGCGCTCCACTATCGAGAAGTAGGATTATTCATTTTTGTAGTGGGCAGGGGAGCCTAGCCCGGACCACGACAGTTTGTCAGAGTAACTAACTTCAGGATGAAATTAGTCTTAACAATCCGTGATTTGAAGAAGCTCTATTTATTACAAAGTCCTAGCTAGAAGCTTGTTTCCTGCATCACAGAGGCCACAGGATGCCCCAGTATCTCACCCCATGCTCACTTGTGTGTGGTTAACTAGAACATCACCCGGAGCAAGCCAGCTGCTCTTGGCAGGGAGACTTCAGCAGCTGCTAACCTTCCAACGGGTTGTTCTAAGGGTTACATTATTTGCAGCACATATGAATTTATGTGTATGTATAAGAATATATATACACACACTACTGAAGTAACGCCACATCCTTTAAGTTGGCAGATGTGGGCCCTATCTCTGTGTTACATTAGAGCCCTTCTTCATGCTTTGAGTCCTTGCAAGAGCTTGCAGCTAGAGAAGCTGTTTGATTGGTGTTTTTGGTAATTTAGAACTGACCACTGGTTAAAGAAAAACGCTAAAGAATTGCAGTTCTTATGAGAAACCAGAAAGGAAGAAGGAAAAGAAGGGTTAACATACAAAGACCAGATACTGCAGCATAGAGTGCCAGAGATCTGGGCAGTGCCATACCTGGAGTGGTGAGCCGGGCAGAGCGAGGTGGGGACTTGGGTAGCGGTGGGACCTGGAGGGCAGCCTGCTGCATCACATCAGTCCTGAGAGATGGAAGGAAGCTGTAAATAAAGGAAGCATAGGTGGCATGTCAGAATCAAGGCAACTTAAATGCAAGGTCTTTACAAGACTTGTCAGTGCAGGACTCACCTATGCCAACCATCTTTAGGTTTTTTTTTTTTTTTTTTCCAACTTAACAGCAGTCCTCCCCTTTGAGCTTTCTGCGTGGGGTGGAGTGCCTTCCTTCAAACCTAGAAAAAGGGATTATGAAGGGAAACTCAACACTGAGCAGCAGCAAGGTGAGCTTAGCTTGTGTGCAGTGAAATTGGTCCTGATGCTGTTGCAGACACCTGTTCTCATTACTAAAGAGACTGTCACTTGCATTGTCTCCCATAAGACTCTGAAAAGACCAAGTTCAGCAAGGCTGTAAGAATTGCTGTCTCCTGCGAATGCTGTTGATGGCTGCTCAGCTCCCAGCCACAGCACATTATGAACTGTGCCAGCCTCATCTCTTGTGTCCCATCACTCACAGCACTGTTCCTCCCTGCAG
Seq C2 exon
ATGCCTTACCTGCTCCTGAACCCGTCCGTGTTGGAGATAAGACCTCGAATGTACCCTGTGTTTTTTGGAGAAAGCATTGAGGTCAACCCCGAGCCCATGCAGGAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003137:ENSGALT00000039587:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(32.0=98.5)
A:
NA
C2:
PF150681=FAM101=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]