RnoINT0126270 @ rn6
Intron Retention
Gene
ENSRNOG00000001011 | Rflna
Description
refilin A [Source:RGD Symbol;Acc:1588777]
Coordinates
chr12:37040692-37047628:-
Coord C1 exon
chr12:37047334-37047628
Coord A exon
chr12:37040802-37047333
Coord C2 exon
chr12:37040692-37040801
Length
6532 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TCTGTCATTTCTCCTCCTAGGCC
3' ss Score
11.04
Exon sequences
Seq C1 exon
GGAGGCTTTTGCTTCGGGAGCGGGTCCCAGCTGGAGCCGCAGGCCGGAGCCTCCTTGTCTCTCCTCTGGCCCAGTGGTGGCGGGAACACGAGCTGCTGGGGCCCGCGCCCAGCGCCCGCCAGTCATGGTGGGTCACCTGCATCTGCAGGGCATGGGGGACACGCGGGAGCAGAGCCGCGACGGCTTGCTGGACAGTCCCGACTCAGGACTGCCCCCCAGTCCCAGTCCTAGCCCTCCCTTCTATGCCCTGTCGCCGGGCACCTTGGACACCCGTGCCACCACTGAAGTTCCAGCG
Seq A exon
GTAAGACCTGGGGATCTGGCAGTGGGAGGGCCGTGCAGAAGCCATCGTGTTCTCATGCCTTCTGAGGCAGACGGGGAGTTAGTTGCACTGGGCTCACCAGGACCCGCAGGCTGGAGTTTTGGGGTGGGTGCTGGCAGACAGGAATACAGAGTAGTATTCTGATGCCCCAACGTCTACTGACTTACAAGGGGGGGGGGGCTGCTGTGGCTCTCTGTCCGTGGGTCCCGTCGCAGCTGCGGCCTCCTACCTTGTTGACCTCCCAGGGCTGCTAAATGAAGACATTTTTGAAAACACGGCTCCGTCTTGTGGGTGTAGAAGTGGAGTGTCCCCGGAGCTGGGACTCTGGGGGTTGGACACGCTTTGCTCTGGTGATGGGGCAGAGAGAGCATTCTAAAGCAAGGACTGGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAGGACTGGCTGAACAGAGCAGAGGTTATACATGAGCCCTGTGGCACGTCCCCAACTCTGTGGCTTGATGGCTTCCGCCGGGCTTGTTAAGGACTCTCCCGCCAAGGTGTGCAGGGCGCCCGCTGTAAGCCTTTGAGGCTCTAAGCAACGTCCAGCCCGCGTTGTCCTCCGGGCATTGACCTGATCCAGGGCACAATTTGGTTGTCAGAACTTTTCTTTAAATCTCCTCAGGTGGCTCAAGCATTGCAGGAAGTTTGAAGCCTGTCTTGAATTGAACCTCTGTGTTGATTTTGGGAGGGTGGGTGGAGCAATCAAGGACTTTAGAAGTTAATATAAGTGTGCAATGCTGTTCTGGGGTGGGGGTGGGGGTGACTTGTAGCCTTAATACTCCTACAGTAGAGGATCTCCTAGTACGGGGGTGGTGGGGGAAGAAATTCCAGAGAATATTTGGGAGGGGGGCCAGGAAGAGGTCGCTCCAGTTCCGTGTGACCCAGAAGCCTCCTTCTGCAAGGCATTCTAGATACTTCCCATGCCAGCCCGAGGTGGGTATGAGAAGAGCAAGCTGGGTTCACTCGTTTCCGGGCTAAGTAGGTGCCAGCCGTGGAGGTATACTGCTGTGGTCTGTGACTTTGTCTGGGCAGGGAAGCCTGGGGCCATACTGAACGACACCTGGTAGATGGTAGATGGCATTTGTCTCATGCTAGGGACAGGTCTCCCGACCTCTGTGTTTAAGTCTGTGAATGTTTGCTAGGCTTTGCTCCCCACGCCCTGGAGGAAGTTGAGGCACAGGGATGGTTAGAAAGTTGTCCAAAAGCTGCCCAGTAGAATAGAACCAGGGAACCCTGGCTCCTGTGTACATTCAAATCTGCCCCTGGTTTTCACTGTGTAGCGAGTTAATGGCCTTTTGATTATTTAAGCAGAAAAATTAAATGCGTAAGGTCCAGGTGCTGCTTGTCATCAAGAGAGGAGGCGGTAGCCATGGCAACCCCGCCCCAGGATTGGGGCCCTGCCCACCTGCCCATCTACCAGTTACTACCCACTCTCCAGGGTCCCCACCTTCTTGAGTTTCATTCCTTCCTTACTCTAAGGTCTAAACTCACACATCCTGTTCCCCGCTGAGGCCCTAACTCTGAGGCCCAGGGGTAGGCAGGGTGACAATTGGCAATCAATTGGTTTGTCTATTGTGTGAGATAAAAGAAGGCTGCCCACATCTGGGGGAGCCAGTTTCAACTGGAAGAAAGCTATAGGAAGGTGGTCAGGTGTCCCCAGGTGTCCTCCCTTAGCACTGTCATACTAGTGGGGAGCTACAGTCACCTTCGCTGTGTGACACAGAGCCAGGAGTGAATGGCCACCCTGTACATAGGTCGACAGTCAGGGAACGACACCTCAGAAAACCAGGGAGTGGATTTGTTGTGGACAGGGCTAAACTGTGTCTCAGTATAAGAGGTTGGAACATGCCAATGTCCTGTGGCAGAACCTAGATGAGAGGAGGCTCTGCTAGGTTAGGTCGAGGCTGGAAACTAATGATTTGTTTCTGGTGTTTTATTTTTAGATGTAGACTTGTGTCTTTTATTTTTTTATAAAAACAGTACCACGAGCTCCCAGGACCCCCTCCAAATTAGAAGCCTCTTTCAGAGATGTAACTGGAAAGTGCTTGTGTGGAGGGCAAAGGGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTCGAGGTTTGCCCTCCCACGTGGCCCCAGGAGAGCAAGATGTATTGGCTGGAACGGGGGCTGCTTGCCTGCTACCTTCACCCCAAGAATGCTCAGCCATTCAGGCAGGACTGAGACGAAAGCAGGCTGACCCTGGCTGCTACTCTGGGCTCCCGAGCTGGACTTCTGTGCCAGATGATAAACATCAGGTGGCCCCCACACCCCCATAATTTATCACAGAGCCATGGTGTGTGGGGCAGACTTGGCGGGGAGCCAGGTCCCGCTGGCTGAGAATAGGTCTGTGTCAGAAACGGCTCCTAACACTTGACAAGCAGTTTGGGCATCGCCCCCGCCCCCAGGCACCCCTCCTCTTCTAGTTTTATGGCCCACAGAGGACTACAGGTGGCTTTTGGGATCTGACCTGGGGCAGCTCTCTGGGTATTTGCTTAGACCACAGCCTCCTGTGTGTGTGTGTGGAGGCGGGGCTCACTGTTGAGTGACAGGAGGGAGGTGACAAGAAGCAGAGTGGGTTAGACTCTGCCTCCCTAGGTTCTCCTAGTTAATTCGTAAGAAAACCTTGCTTCAGGACAGGATAGACTATGCTTCTGATGACCCTGGACTATCAGGAGGGGCCACTTCCTCCCCTCAGGTGGGTGCGGACCTGGGCCCTAGACTGAGCAGAGAGGGAAGGGCATGGTGGGTATGATTTCTTTGGGGGCTTTCCGCTGTGTTTTATAAAAAAGGGAGCCAAGGAGATGTTAAATGCAGAAGTATGGTGAGGTGGGAGGGGTGCCTCTGTGGGCCCATGCTGAAGCATCCCTTCCCCCTGAGGTACCAGCCACAGGACGGGAATAGTGTAAAATAGTTTATTTAAGGAATGAGAAGGGAGTAGAGACAGGGAAAGACACACGCTCGTGCACACACAGGGGGAGGGGGAGAGAAGTGGCAGAGAGTAAGAGTTGAGAAAGGAGACAGGGAAAGACAGACACACCATACATACAGAGACAGACAGCCAAACAACCCCTTTATAGTAAGTCAGGCGTTCCAGGCTGTTGCCAGGTAACTTTCTATGAGGGGTGGTGCCTGGAGTCAGGAAGGATGGATGGATAGTGGCTAGATGGATGGACAGACAGTGGATAGGCAGAGGACAAGGCTCAGTAGACCCGTGGCCAGGGTGAAGTATCTATATGGACGCCCGTGGAAGGGAGCCAGTATGTGGGGTGGGTAGAGAAGTCTGTTTGCAGCGGGAGTCAGGAGGCTGCCAGATCTGTCAGGGCCTCCTTCCAGCGGGGTCTCCACGGTCCGGGCCCCGTGGTTAGGGCACCTGCTGGAGCTTCACTGTGAAGAGCAGACAGGCCACACCCTGACAGGTGTCTAGGGACCCCACAAGCAGCCACCTTCTGGGGAAAGGACCCCAGATGGGACCGGTTGGGATGGCTGCCTCGAAGGTGCCACAAACAGTGTGGCTTGGAACAGAGGCCACCCCTCTCATGGGTCTGGAGGCCATATCACCAGAATCGAGGCCTGAGTAGGGATCCTTCCATGACTGGTAAAGACCATTCCTGGCTTCTGGTGGTAATGATGTCTGATGACAAATCTGGACTGTCTTGTGGCAAGGTGTGGATCTTGGTGGGAGCCCTTGGCTATGGCGTGCTGAGATGCTGTGGCAATATCTTCTGTCATTTTCATCCAACTCTGTTCTTAATGTCCCTGTTCCTAAGGACACTAGTCAGTCAGTGAGACCACATGACTGTTCCGGTCACAGCAGGGGGTTTGGGATATCAGTACCACTAGTCTTTCTAGCTTGCTGTGTGTGGGAACCCATCGTGGTGGCCTCTCCCTCTGTGCCTTTCTGTGGTCCTTTCCTAGGTCTCCGCCACTGCCAGTAACAGCCCCTGCCTCCCGCAGGAAGGACAGGGATTTGTGTTGTGGCCCCTCCTTGCTTCACTTCCTCCTGGGCTCAGGTTAGACTTAGCCCAAGTCTATCGCAGGAATTCCTGGTCACAAGCATATTCGACATGCGGCTAAGGACAGTCAGGGCCTAATTCCAGCCCTTGGGAAGGTGAGACAGGAAGATTGCTGGGAGTTCTGGGCCAGCCTGGTCTAGAGTGAGAGACTCCATTTAAAACAAACCAGAAGCTGCCAAGGGTGTCTTTGACCCCTTGCAAAGTCTCCATGTAGCATTGAGCATTGATGGAGGTGGGAGGGCAAGAGTCCCTCCAGCAGCAGCCCGTGGGGCCATTCCCCTCCTTCACAGATAGGGCTTACTGGATTAAGGATTTCCATGGGTTATGGCACTATTTTGGTCCCATGGCTGTACCCGCTGTGACTTGGTTCAGCTAGGCTAGACCACCACCAGGTAGGGCCGTCTCTGTGTGGTACCTCGATCTTGGCCATACTGCGTTATCACTCCCTGTGGCTTTGGGTTTTCCCAGGGTGCCAAGCCCTGTGTCACCATATCTCTAGCCAGCCAGCAGTATTTACCACCACCGGGATGAGCAGTCAGTGGCTCATTATGTTCAGAACCTCGGCCCTTTGCCCTGGTCCCCACCTCACCCCTATCTGACAAGCAGTTAGTCACTGCCCATGACTTTCTGCACTCAGGAAAAGGCAAGGCTGGGGTCAGGGCAGGGCCAGCTTGGGAGGGGGGGTCCATTATGATTGGTAGGTGCCCTCAGACCTTTCTTCCCCTCTATCCTGATGTCCCAGAGCTGCAAGGGGACAATGAAATCCCCTGGGAACTGGCCATCCAACCCCTCAGCCCCACTGTGGGTCCCATTGCGGTTGGCACACTTCAGGTCACGTTGCAACTGGAGGTCTCAGGGTTGAGCTTATGTGTATATGCATACCGTGTACACAGTCCGGTACCCACAGGGACCAGCAGGGGGCATCAGTCCCCTGCAACCTGAGTCGTGCGTGTGCAAGCCACCACGGGGATGCTGGGGACTGAACCTGGGTCCTCAGCAAAGCAGTAAGTGTTCTTAACCACTGAACCATCCTGCCACAGCCCCGCGGAGAATCTCCTTAGATGAAAACAGGGCTCCTGAACCCTGAGTGGCCACCCGTCTGGGATCTCCAGTGCCCTAGGGAGGCCCAGCAAGGCAGATGTTGTGATGTGAAGACTCCATTGTAGTCAGAGCCTGGGCTTTGTGTCTCCTGGGTGATAGTCACCCCCCCCCCCATAGTCACTATGGAACTGTATCCCAACCTCTGGGTGGGGGCACTGTTTCTTACCCACTGCAGTTGAGCTTTTCCTGTGGGCTCTGCAGGCTGTAGGGTGAGACTTTCTCAAAATAACCCTCAGTCAGGGTTTTGACTGCAGAAATCTCCCATAGGGAGTAGCTAGTGACTGCCACCCACTTCCCTTGGCATCTATGTCCAGTCAGTCGCCCTGCCCTGGGCCTTAGCCCAGTGGATACCTGGGCTCTGTCCTATCTCTTGGGGCCTGCAGCCTCTCTGTGGGCGGCTGAACTGTTTTTCCAGCAGAGCCCTTTGAAGAGCTGGCTCCTTCCACTTGAACTGCGCTTTGTCTGACTGGCAGAGTCCTACGGGACTTCTGGCTGGAATGGGGCTACCGCAGGTTGGTCAAGGCCCAGGAAGCAGCCTCAAGAGTGTTGGGTTCCCTTTTTTACCTGTCAGTCTGTCTTAAGGTTCTCATGTAGCCCAGGATAGCCATGAACTTTCTATACAGCTGAAGATGCTCTTGAATTCTGATTCTCCTGATTGTACCTGCTGGGATTGCAACCCCCCCCCACTTCATTTATGGGGTTCTGGGAGTAGAGGCCTCATGCATGGTAGGCAGGCATTCTAATGCCCATGAGCCTTCCCCTCCAATTCCGGATGAACCAGAGGGCCAGTGGCCTGGGGATATGCATCCAAATGCCTACGTCTAAAGCTTTAGTCCGTGTTCACACCTTTTCTCCTCCAAGGCCACATGGGACCTAGTGCTATACCCAGGTACAGTAGCAAATCAGCAGACTTACCTTGTGCATTTGGGGGGACACCAAGCTGCAAACAGTCTCTCTAGTATTATTTCCATAAGCACTTCATCTGGGAGCTTGGTGGCATGGACCAGTGCTGATGTCTCTCGCTCCTGAGGCTGCATGGGGTCCCATGGGAGACAGGTGCCTCCCCCTGACTCAGGCACTATACATTAATCTCACTTAGGGTGCTGGTATGTGAAGACAGCCATGCCCCTCCCTCCTGGGGTCGTGCACAGGCCTATGGGTATGCCTGCCTGTCCCTCCCCCCATTCTCAGAACTGTGGGTAGCAGACAAATTGAGGTCCCCTGCCCTCTGTCATTTCTCCTCCTAG
Seq C2 exon
GCCACTTCCCTCTTCCCAAATCCCCCAGCCCTGGAGATGAGGTCCCGGCTGCTGCCTGTGTTCTTTGGGGAGAGCATCGAGGTGGACCCAGAACCCGCACACGAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001011:ENSRNOT00000001337:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=NA C2=0.216
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(29.2=98.2)
A:
NA
C2:
PF150681=FAM101=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]