GgaINT0005494 @ galGal4
Intron Retention
Gene
ENSGALG00000003137 | FAM101A
Description
family with sequence similarity 101, member A [Source:HGNC Symbol;Acc:HGNC:27051]
Coordinates
chr15:4736132-4745132:-
Coord C1 exon
chr15:4744893-4745132
Coord A exon
chr15:4736242-4744892
Coord C2 exon
chr15:4736132-4736241
Length
8651 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
AGCACTGTTCCTCCCTGCAGATG
3' ss Score
11.77
Exon sequences
Seq C1 exon
CCGGAGGGTTTTCTCCCGCTGCGGCCGCCTCGCTGCCCCCCAGACATGGTAGGGCACCTCCAGCTGCAAGGGATGGACGAGAGCCTGAAGGAGAAGAGCCGGGAAGGCTTGCTGGACAGCCCGGACTCGGGGCTGCCCCCCAGCCCCAGCCCCCCTTTCTACTCCCTCTCGCCCGGGGGCGGCGGCGGCGCGGACCCCTCGGCCTCGGGGCAGCGGCGAGAGGCCAAGGACGGCAGAGGG
Seq A exon
GTAAGAGCAGAAGCGATGGTGGGAGAGGGGGGAGAGGGATTTGAAGGACGGTGGAACTTCACCCCAGGGGCCTTTCGGGTTTCTTTGACGTATCAAAGACGTTTGAAGCGTATTGCACACAGCTAACTGGCTTCCATGCAAAATAAAAGCTGTCAGCAACACTGAGATTGCCGTGGAGAAAGTTCATCTACCTGTGCAATAGCGACTGCTCACACTTCTTCCCAGAAGAGACTCTCTGCAGTGACTTACCGTGCCCCCATTTTCTTTCTCAAGTTCTAAGGCTATTTTTGCATATGAATCAAAACTGCCTTCTGCTGTCAGGTATGCCAGAACCATCCCCAAGAACAACATCTCAGCAGAGCGCGGTGGGGAGGGTGTGAGATGTTACACAGGGAAATCAAATCCAAAGCCCACTAACAGCCTCTCACCGCCACGCAGCCTTACCTGCAGGCGCCTGGGTGCACGCCGTCTGATGGGGCTGTGTGCTCGGTTACCCACGTTCCTCTGGTTTGGAGGCATCAGGCCGTTGCTACATGTCTGTAAAATAAAACGTGGGAGGAAAATGAATGAACGCTTGCTGGGTCAGAACACAGCTGGAGTGGAGGTGTGTGCGGAGGTCAGCAATGGGGGTGTGATGGCCTCCATTCCAGCCATCGTGACAGCCGGCCACCACTGCTCCCAAGAAAGCCCCTAGATATTGGAGATGAAAGAGGGTAAGAAAAAGCTCTTCTAGCTCTTGGTCTGATAGGACTGAGAGTTTTAGTGCTCCTGCAGGGGGAGAAAAGTAGTTATTCCAGTGATCTACATAAAGCAAAATTACATTTTCAAGTTATTTTTTTCTGTGAACACAAACAAACATTTTAAACATTTCTGAGGAACAGCTTAGGTTTTATCTTCTGATTTTTTTTTTTAATATCATACTTCAACAGTGTGGGCAGCCCCGGGCTCCTGCGGTTAGCAGATGGGTGCCACATACTGCAGATATTTCTGTGTGTTTAGTAGGTACAGAGGACTAAAAGATACTGATACTGAAACTAATTAGACTGCTTTAATTGGACTGGTGCAGGACTGTACTCTCTAACTCTGCCCGTTTGGTATATGGGACTGGCAGGAATTTTTACTCGACTGCACAGTTTCACTTCCAGTTTCCAACAGTCTACTTGCAGCTGTTAAGAAAACAGGAGAAATACGGGGAGCATTTCAGTGTCTAATTAGCTTTAATCTTACCATTTAACAAGGACTTTCAGATCTATAAGCAATTACACAATCTGTGAATGTGTTTAACTCCACTACTCTGCTGTTCATCAGAGCATGCAGAGTTGGCAAATAATTGCAGCTATGTGCACACCAACACATGGGTTCTTTTAATCACTTATTGTATTAGTGCTCGTTTTGCTTACGGATGTGACAGAACCAGGAATGCAGTCTGCATTCTTTGTGGTATAATACTATAAAGCCATATATAAGCTCAGTTACTAATGGCCAATGTTCTAGTACGTACAGTTACAATAAATTGCTGTCAGGTGAAGAAAACAACATTCCAGATCTGTGGGAAGGATTTCATACTGCTCCTTGCTGCAGACCTATCAAAACCACCAGGCTGAACCCAGTCGCGTTCTTTTGCAGTCGGCTGCTTTGCTCTAACTTCACAAATATGCTGCAGGATTTTTCTGCTCTAGGAGAGCTCTTCTCATGCAGGCTAAAAGGAGATTGCATGCTCGTATCGAAGACTTCCTTGTGTGTAAAATCCATGCTCTCCCTGCTTTGTGTCATTAACTGTGACTCTGAAAAAGTAAACTCCTTTCTCTTTAATAAGTATGACTTTGTTTCAAAGACAATGCAGCATTTATTCCCATTTAACCAGCCAATTTGGCTACAGCTTTGGGATCCAAGAAAATATGAAAGGCAATTTGGGGCCAGAGTCATAAATACCACAAGTTCAACACCATTTAGGGACCTTTTCTTTTTTTCTTCTTGCGTTTTACTTGCAGTGCAGGAGAAATTGGCTTTTACTTATTCAAATAAAACCCACGTAGGGAATTTGTTAATTGTTTTCTGCTGAAATGCAAATATCCTAAAGAAAATAGAAGGTGACTTTTACCTAGTTCTGCCCTTTAAATCTGAAACATGATTAAATTGCTTCTTAAGACTGAATTCCCTAGGCTTTGCTTGTAATGCTGGGCCAAAAGGAACATACATACAATGAAATAAATCTCTAATAATGCACACAAAGAAGCGGTTGCTGGAAGGGCAGGGAATGAAATCACACCAAGGTAGCCAGATCTGCTTAGAGTTTTCCCTGTTGTTGTTGCCCATGTGTATAGTTTTAGGCCAGAAGGACCGATTGTGAGCTCTTGCTAATGCTGCACTGAAATAAGTGCTTAGCATTCAATAGTATTGCTCCACAAGGATATAAAAGGAGATCAGAACCACATTCTTCTGCAGAACCATCCATCGTGACTTCTTGAAGCAGCATACTTCTTGTCCTCTCCCACTGCTGTTGCCTCTGCAACAAATTCAGTTTTATTTGAAAAACTAAACATTTATGAGTTCAACTTGCCTCGCTGAGTGCTGACTTCAGTGGGACTATCCCAGTGGATGGGCTGTCAGATAAATGCCCCCATGTAGGGAATTCCTACTTACATTGTTGACAGGAGTGCAATATTAGAATCAATCTTATGGGAGAAGATTCTAGCTTCATCTTTAGCACTGTGGAGGAGTGTTCTTTGCCCCTTAGTGTAGACTTCATGGGTATGGTTCCATCAATGGAGTCCAGGTTAGCTTGTGTGCCTTCTTCCTTAATTGCCACATATTGAAGAACTCTTGGGGCCACAGAGACTGCGTTTTGCTCTACGCTGAAAGAGCTTCAGGCAAGGGGGCTGTCTTCTGGGGACTGGGTGGGGAACGTAGCCATCAAAATGTTTCCATGCAATACGTGACTCGCAGACCTGCCGACACCCCCAGTGAAAGCACATGTGAGAAACACCCCAACCTGAGCCAGCTCGCAGCCTGCGTGCAAAGCAGGTGACGTCTTTTTAACTCCACATGGGCTCCAGCAACTTAGGAAGCCTCCGGGCTTGTCTGGAGAGCAAGGCACCCATCTGGCACAGCAGCATAGCTTGCCTTGGAGCTTGGCATTTGCCGCCTGGCATCCTGACCCACTTCTGAACCACTCCCACACGGTGAGATCCTGCAGGAATTCCCCTGGCAGATGTTGACAGTGGTTTCACCTCTTGCCTGCTGGTCGCCATGTCTGCAGCCTGGAAAACTGTAACCACAGCTGGCTTTTCTCTGTACCTTGGCCCATCTGGTTCTGAATGTGCTCCCACTTCTCTTCCTCCTTGGTTCAACATCAGCAGCGAAGGAGAGGGAAGAGAGGAATGGCAGTGGGCCTCACCTAATCTGCAGGCTGTGACCTTCTAGGCAGATCAAGGTCTGGTTCCTCTAAGACCCACCTGATCCTGGCTCCAGCCTGTTCTGACAGAGCTGCTGCCATGCAGTAGTTAATGGCTCAGTCCTCCCAAATGGAGGAAGGAGTGTCAGTGGGGTGCAGCATGCATTGCTAGCACCAAGTAGAAGTGTTTCTCCAGGGACTGGCGTGCAAATATGTGTAACTGCATTGAAACTGCACTGTTGGCACAGTGCCTTCTGCCACAGAGTGTCTCTGAATGCTGTGGAAATGAGATGGGACTGGGCAAATCTTTCAGCAAGCATCAGTCTGTGTTATCAGTGGAATTAGTAGAGAAAAGGTTGTGTAGTTAGTAGTTAACACACAAGTTAGTGTGCTCACCTCTGTGACAGTCACGGGGATGGGCAGGCATGTGGTCTTGATTCAGGCAGTTTGTGATAAAGGCAAGCAGGGAAAAAGTCATAGGAGTCTCATCATCAATCCTAAAAAAATGTGGCTATATCTAGGCTGGTATCTTCTAGCTGTTTAATTTCAGTTGCATCTGTATGTAACACTTGGCAATAAGCAAAGTAGTACATTTCCCACTTGAAATAGAAGAGGAGACAGGCAGGAAGGATTAATTCTTTGAAGTAATAAAGCCCTGCTTTATACCTGAGGTTTGCATTTACTGTTATCACTTCCAAATAAAATCTCATCCGGCTCTACTATAAATTACTTGTAATATGCAATACATGGGAAAATAAATGGCCTGTTAAACAAATACTGCTTATCAGCTAGAGCGGAGAATGTAGATGTGTGTCAAATAATTCAACTGGATCTTTCATTACAGCTGTAAATAACAGCTGAGTAAAGTGACATTTTCATGGACCTGACATGTTGCCATAGTGGGAAAATGTGGTGAGAGATTTGCTTATGCCCTAGCTAAGTCAGGAGCTGGGAATTTGGAAAGCTGTATCCTGTTTATTGCCTTGGTGCCTGGAAAATTGTTTCCCCCTACAGTCCCTAGGGAGCTAACGCCAAATCCTAGTGCCTTCCACATAATGACCATAGCTAAAGAAGTCAGTCTGTTCTGATCTGTCTTGCTTTCTGGGGAGAGGTTTTTTGGAGTTTATATTTTTCAAGTCACATTAATTTCCTTCCTTCCTTGTTGCTTTGCTGCCTGAAGTCTGGAAGCTACAGGAACAGTCAGGGCCAATTTCATGGCACTTTATTTACCGTAACTCTGCTTCTATTCCTTTAAAATACCCAAGTGAAAAGCACCTTAACAGAACCCGCTAACTCAAATTAATTATTAGGTGTAAAATAAGATTTTTCTGCCTACTGTATTCTTTTTGCTGTTGCTTAGGGACTCTGAGGTCTGAATGCCCCCAGGATCCAAGCACTGATTTGTCACTTCTGGCAGGTATGAAGCAGTGACATGAAACTGAAAGGCATGCATGAGTTCTAAAGCAAGAAGTCCCCCACAGTACTTATGTTAGCATAAAAGCAGCACACTTGGTCAGCAGTAGACTGAATTCCCTTCAGTAAATTATTTTTGGGGGTGTATTTATTTATGTACTGCTTGAAAAAAGAACATAGCTGCCCAGGCCTTTACATGCCCGAAAGGCATCAGAGGTAAGGCAGAGGGAAAAATGCAGCCAAACAAGAAATCACTTCAGCATTTTAATACTACTTTAACCCTTTGCTGGTTAAGACAGATTAATTAGGTCCTAGCTGTAGTCTTCCAGCTAAGCAATCCTAGGGTTTCTTTGGATAGACAGACCTTGACTTATGGATTGCTTGTGGGCAGCCTACTCTAAAGCCATGGGTTTCTCCTCTCTGTCATCAACAAACTCTGCTCAATTCAGCCCATCTGTGGTGGGGGGCTGGAAAGAAACTCACCTTATTTCCAAAGTGTCTTGAGATTGCTGAGTGATTGATAGAAATGAGCCAAAGCTCATCATTTTCTCTATGGAGGTCAGAAGTCCAATGTTTCTGTTCTTTCAACCATTCCTGTACAGAAGGAAAAATAACTGAGTACTTTTTTTTTTCTTTTTTTTTTTTTGACAAGCAGAACATTTTTGCTTTGTTTCTACCTTAAAATAGATTGGAAGAAGAGGGTGTCAAACTGTTGCCAAAAAGCCAGCTTTTGGCACGTGTCAAGCATATAACATTTCAGCCCCAAAGACACATCTTTTGGAAAGCTCGGGTGCGCTGTTACTTGCTTCCAAACTCCACGTGAGATTCAGGAGCAGGTATTTCAGAACATCACCAGAGGCAGAACAAGAAGTCACCTAAAGTTCCTTTCAGTTCCTGCTGTGTAAAATCTGTGCTCACTGTTTAGTGACCCTTTCACTCTGTACAAGCGATGCGGTTGCTTGGTGAGCAGACTGCAGGGTCTTACAGCTGATCTCTATTTTTAGAGCATGCTTTTTAAATTATTTAAGTCTTCAATGTGCAGAATTCTGGGTGACTTTCCCACATGCAGCAGCTCATGGCACTGCTTGTGGTAGATAAGTGTGAATTCATAATGGTCTCTGGTGGGCGGTAGAAATCTCCGGTCTGCAGTCGTCCCAGATGTCTGAACTAATAAAGCCTCACCTGCAGATCTGAAGTTAATGCTAGTTGTATGAAATGCATTATTCTCACTTTTAGCCTTCCCTGCCTAAGTCTAGGTGAGCTAACCTACAGTGCAAATAGTCTCATCACCACTCCGTTCAGATCTGACTTGGAGAGAAGTTAATCCAAATGTCACCAAATTCAGTGGCAACTTTTGGACTCTGGTTTCAGTCATGCATGACCCATCTCCTCCATGCAGATGGGTATTGTTTCTGCAGCATGTTCTTGTTTCCTGTTCCCTGCTGCGGGACTTGGGATTTCAACAGACAGTGTTGGCCTCTGTGCCCTTGTTCTGACTGAGCAGCAGAACGCTGGGGGTCACATGCCCCAGGAATATTCCCACTAAGCCACAGGAAGGACACTGCCTCCTGCATCCTTGTCTCCAGGGACATTCAGAGCACGCTTAGTGTCAGCATATGTTAGCAATAGGTGTGAAGGTTTGTTTCCCTGGGAGCACGGAAATTAGTTCTTTCCAATTATTTCTTTAATACAGCACTTTGCAGAACTCTTTAATACCAGGATTTCCTTTGTGCTACTCTAGCAAGGATGCTCCTTTTTCTTTTTTTTCCCCACACCCATTCAGGCTTTGTTCTTTTTGACAGTGGAACAGAAATAGTTGAAACGAAGGGTTAGCCATTTAACATTACAGTTTAACACCATAGTAGAGTGCAGGGATGTCTCAGTATGGAAAGAGTAAACAGCTTTGTGGCTTTGGGACACAGAATTGAAGGGCTTGGAGAAAATTCAGATGAAGCAATGACATTTTTTGCTTTAGCCTCAGGCAGAAAACCCAAGCCACCAGAGAAAACCAGACCTTAGACAGTGTGAGCTGATGCTATTGAGTGGGCTCAGGGCACTTTTGCCAGTTGACACCGGCTGAGGGATGAGCTGGGGAACACTGCAGGCATCTGCATAGGGTACAGGACAGGGCACAAGTTCGAGTACCTTGCCCAGCACTGGAAGCAGGGACTGGACCACAGCTCCAGTGTTGCTCCTGTACCTTCCATCCAGAAGGTTCTGGGGAGGGCAGAGGGAAGTGACATGGGAAGAGCAAGCCAGTTTCTCTGTATCTTCAGCTACCTTCAGTGGTACCATGAGTCCCGAGATTATCTGACTGACCAAGACACTGATGAAAAATGACTGATTGCAGCACACATGGCTTATGCATGGTGGAAAGTGGAAAAACTATGAGCTTTTAAGTCACCTAGAAACCTTTCAGCCCTGGCCAGTGGCTGCCAGCCATGTCCTTTAAAGAGACCCTGTGCGTCATAAATTGCTGCTGACAGAGAAGTGGCAGGGACCAAAACCCACAATGACATTTTTCCAGGATTAGGCTTAATTAGCTTCTGGGCTGGGTCTAGAGACAGGATCCCTATATGTGAGAACTGATATCTGAGGGCGCTCCACTATCGAGAAGTAGGATTATTCATTTTTGTAGTGGGCAGGGGAGCCTAGCCCGGACCACGACAGTTTGTCAGAGTAACTAACTTCAGGATGAAATTAGTCTTAACAATCCGTGATTTGAAGAAGCTCTATTTATTACAAAGTCCTAGCTAGAAGCTTGTTTCCTGCATCACAGAGGCCACAGGATGCCCCAGTATCTCACCCCATGCTCACTTGTGTGTGGTTAACTAGAACATCACCCGGAGCAAGCCAGCTGCTCTTGGCAGGGAGACTTCAGCAGCTGCTAACCTTCCAACGGGTTGTTCTAAGGGTTACATTATTTGCAGCACATATGAATTTATGTGTATGTATAAGAATATATATACACACACTACTGAAGTAACGCCACATCCTTTAAGTTGGCAGATGTGGGCCCTATCTCTGTGTTACATTAGAGCCCTTCTTCATGCTTTGAGTCCTTGCAAGAGCTTGCAGCTAGAGAAGCTGTTTGATTGGTGTTTTTGGTAATTTAGAACTGACCACTGGTTAAAGAAAAACGCTAAAGAATTGCAGTTCTTATGAGAAACCAGAAAGGAAGAAGGAAAAGAAGGGTTAACATACAAAGACCAGATACTGCAGCATAGAGTGCCAGAGATCTGGGCAGTGCCATACCTGGAGTGGTGAGCCGGGCAGAGCGAGGTGGGGACTTGGGTAGCGGTGGGACCTGGAGGGCAGCCTGCTGCATCACATCAGTCCTGAGAGATGGAAGGAAGCTGTAAATAAAGGAAGCATAGGTGGCATGTCAGAATCAAGGCAACTTAAATGCAAGGTCTTTACAAGACTTGTCAGTGCAGGACTCACCTATGCCAACCATCTTTAGGTTTTTTTTTTTTTTTTTTCCAACTTAACAGCAGTCCTCCCCTTTGAGCTTTCTGCGTGGGGTGGAGTGCCTTCCTTCAAACCTAGAAAAAGGGATTATGAAGGGAAACTCAACACTGAGCAGCAGCAAGGTGAGCTTAGCTTGTGTGCAGTGAAATTGGTCCTGATGCTGTTGCAGACACCTGTTCTCATTACTAAAGAGACTGTCACTTGCATTGTCTCCCATAAGACTCTGAAAAGACCAAGTTCAGCAAGGCTGTAAGAATTGCTGTCTCCTGCGAATGCTGTTGATGGCTGCTCAGCTCCCAGCCACAGCACATTATGAACTGTGCCAGCCTCATCTCTTGTGTCCCATCACTCACAGCACTGTTCCTCCCTGCAG
Seq C2 exon
ATGCCTTACCTGCTCCTGAACCCGTCCGTGTTGGAGATAAGACCTCGAATGTACCCTGTGTTTTTTGGAGAAAGCATTGAGGTCAACCCCGAGCCCATGCAGGAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003137:ENSGALT00000039587:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(32.0=98.5)
A:
NA
C2:
PF150681=FAM101=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]