MmuINT0060443 @ mm10
Intron Retention
Gene
ENSMUSG00000037962 | Rflna
Description
refilin A [Source:MGI Symbol;Acc:MGI:1920371]
Coordinates
chr5:125003448-125010481:+
Coord C1 exon
chr5:125003448-125003738
Coord A exon
chr5:125003739-125010371
Coord C2 exon
chr5:125010372-125010481
Length
6633 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TCTGCCATGTCTCCTCCTAGGCT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCATTTGCATCAGGAGCGGGTCTCAGCTGGAGCCACAGGCCGGAGCCTCCTTGTTGCTCCTCTGGCTCAGTGGTGGCGGGGACCCGAGCTGCTGGGGCCCACGCCCCGCGCCCGCCAGTCATGGTGGGTCACCTGCATCTGCAGGCCATGGGGGACACGCGGGAGCAGAGCCGCGACGGCTTGCTGGACAGTCCCGATTCAGGACTGCCCCCCAGTCCCAGTCCTAGCCCGCCCTTCTACGCCCTGTCGCCAGGCACCCTGGACACCCGGACCACCACTGAAGCTCCAGCG
Seq A exon
GTAAGACCTGGGAATTGGGCAGTGGGAGGGCCGTTCAGAAGCCAGCATGGTCTCATCCCTCTTCTGAGGCAGACGTGGAGTGGCACCCGACTCACCAGGACCTGTAGGCTGGAAGTTTCGGGGTGATTGCTGTCAGGCAGGAATACAGAGTAGTATCCCGATGCCCCAAACTCTACAGACTTACAAGGGGGGCCTGTTGTGGCTATCTGTCCGTGGGTCCCGTCGCTGCTGCCACCGCCTCCTACCTTATTGACCTCCCAGGGCTTCTCAATGGAGGCATTTTTTGCAAACCCAGCTCGGGTCGAGAGCCTCCGTAGGTTTCGTCTTATAGGTGTAGAAGTGGAACTGTCCCCGGAGCTGGGACTCTAGGGGTTGGACACTCTGCCCAGGTTGCTCTGGCGACGGGGCAGAGGGAGCAACTTGAAGAAAGGAGTGGTGGAACAGAGCAGAGGTTGAACATGGCCCTGTGGCTTGATGGCCTCGGCCGGGTGTGTTAAGGACTCTCCCGCCAAGGTGTGCGTGCAGGGCGGCGCTGGAAGCATTTGAGGCTCCAAGCCACGTCCAGCATCCTCCTCCAGACATTTGACCCGATCCAGGGCACAATGTGGTTGTCGGAACTTTTCTTTAAATCTCCCCAGGTGACTCAAACATGCAAGGAAGTTTGAAGCCTGTCTTGAATTGAACTTCTGTGTCTCTTTTGGGAGGGTGGGTGGAGCAATCAAGGACTTTAGAAGTTAATATAATCGAGCAATGCTGTTCTTAGGGAGGGGGGAAAAAACTAGGAACCTCAATATGGATGTGATGGGGGAAGAAATTCCAGGGAACATTTTTGGGGATGGAAAGAAGGCACCAGGAAGAGGTCGCTTCGATTCCCTGTGACCCCGAAGCCTCCTTCTGCAGGGCATTCAGGATACTTCCCATGCCTTCTGGGTCAGCCAGAGGCAGTAGTGAGAATAGCTCTGCTGCTGTTACTGCTGCCTTTCCTGGCTAAGTAGGCGCCAGCTATGGAGCTATACTGCCCTGGTCTGTGACTTTGTCTGGGCAGGGAAGCCTGGGGGCTATTACTCAACGACACCTGGTAGATGACATTTCCCTCAAGCCAGGGATGGGTCTCCCCACTTCTGTTTAGTCCTCACAGTCTGTGAATGCTTGCTTGCTTGCTTGCCTTTGTTCCTCATGTTCTGGAGTCAGTCGAGGCGCAGAGATGGTTAGGAAGTTACCCAAAGTTGCCCAGCAGAATTGACCCCAGGAACCTGGCTCCAGTGCACATTTAAATCTGCCCTGGTTTTCACTGTGTAGTGCGTTAACGGCTTCTTGACTATTTAAGCAGAGAAATTAAATGTGTAGCCATAGGGTCCAGGTCATCAAGAGAGGAGGTAGTAGCCATGGCAACCCCTCCTCAGGTTTGGGGGTCCAGTTGTGGCCCCGCCCACTTGCCTATCTACCAGTTCCTACCCACAAGGGTCCCCACCTTCTTGAGTTCCATTCCTTCCCTACTGTATCATCTAAGTGCCAGCATCCTGGTCCCCTCTGAGGCCCTAACTCTGAGGCCTAGGTATAGGCAGGCTGACAGTTGCCAATCAACTGGTTGGTCTACTGTGTGGGATAAAAGAAGGATGCCCACATCTTGGGGAGCCAGTTTCAACTGGAAGAAGCTATTGGAAGGTGGTCAGGTGTCCCCTGGTGTCCTTACATAGCACCATCGTACTAGTGGGGAGCTACGGTCACCTTCACTGTGTGACACGGAGCCAGGAGTGAATGGCTACCATGTATGTAAGATTGACTGCTACAGACAGTCAGGGAATGACGCTGCAGAAGCCAAGGGTAAATCAGGGAGTGGATTTTAGGCAGATGGGGCGACAAACTTGTCTCAGTCTAAGAGGACGGCACATGCCAATGTCCTGTGGTAGAGCTTTAGAGAAGAGGAGGAGAATCTGGGCCAGGCTCTGCTAGGCTGAGGCTGAAAGCTAATGCTTTGTTTTTGTTTTGTTTTGTTTTTTAAAAAAACAGTACCATGAGCGCCCAGGACCCCCAAATTAGAAGCCTCTTTCAGAGATGTAACTGGAAAGTAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGTTGCCCTCCCACGTGGCCCCAGGAGAGCAAGATGTATTGGCTGGAATGGGGGCTGTTTGCCTGCCACCTTCACCCCAAGAATGCTCAGCCGTCCAGGCAGGACTGAGACGAAAGCAAACTGACCCTGGCTCTGCCACCCTGGTCTCCCAAGTTGGATTTCTGTGCCAGATGATAAACACCAGGTGCCCCCGCCCCCAATACTTCCATCACAGAGCTGTGGTGTGTGGGGCAGACATGGCGGGAAGCCAGGTCCTGCTGGCTGAGAACAGGTCTGTGTCAGAAACAGGCTCCAAACACTAGACAAGCAGTTTGGGCACTGCCCCCTCCCCTGCCCCCGGGCACCCCTCCTCATCTAGTTTTATGGCCCACAGGGGACTATGGGTGACTTTTGGGATCTGACCAGGGCAGCTCTCTAGGTATTTGCTTAGACCACAGCCCCTTCTATATGTGTGTGGGGTGGGGTGGGGGCGGGGCTCACTGTTGAATGACAGGGGGTGACAAGAAGCAGAGTGGGTTAGACTCTGCCTCCCCAGGGTCTCCTGGTTGATTCATAAGAAAACCTGGCTTCAGGACAGGATAGAGAGCTGCTGATGACAGGCTGGACTATCAGGAAGGGCTGTTCCCTCCCACCTCCCCCCGAGTGGGCCCTGGTCCAAGCGGAGAGGGAGGGGCATGGTAGATATGACTACTTTGGGGGCCTTCTGATGTGTTTTATAAAAATGAAAAAAGAGCCAAGGGTATGTTTGGTGGAGCAAAGAAGTATGTTGAGGTGGGAAGAGTGCCTCTGCGAGCCCATGCTGAGGCATCCCTTCCCACTGAGGGACCAGCCACAATGGGTATAGTGTAGAATAGAGTTTATTTAGGGCGTGGGAGTTGAGAAGGGAGGAGAGAGGTGGGGGGAGGCTGGCCAGGAACATGTGGAGAGGGAGGGGATGGGGAATGGAGAGAGAAGGGGCAGAGGGTAAAAGGGACCCAACAAGCCCCTTCGATAGTAAGCCGGGCAATAGCTGGCTGTTGCCAGGTAACTTTCTACGAGGGCTGGTGCCCAGAGTCAGGAAGGATGGATGGATAGACAGTGGATAGATGGACAGATTGAAGGAAAAACAAGCAGGCAGATGGATGGATGGACAGTGGAGGGGCCTGGAGGACAAGGCTCAGTAGACCCGTGGCCAGGGCGAGGTGTCTGTATGGACTCCTGTGGAAGGGAGCCAGTGTGTGGGGTGGGTGGAGGAGTCTGTTTGCAGAGGGAGTTGGGGAGGCAGGCAGATCTGCCAGGGCCTCCTTCCAGCCAGGCCTGTTTAACCTCAGTGGTGGCTTGGTCTTCGGTGGATTGCCAGCTGGTCCTCACAACCCCGGCCCCATGGCCCCATGGTTAGGGCACCTGCTAGGAAGAGCCTCACGTGGAACTTCAGTCTGGGGACCCCACAAGCAGCCATCTTCTGGGGAAAGCACTACAGATAGGGCCAGTTGGGATGGCTGCCTCTAAGGTGCCAGAGTGGCTTAGAGCAGAGGCCGCTCTCTCGTGGATCTGGAGGCCATACTACCAGAATCAAGGCCCGAGTTAGGATCCCTCTGGACTAGCGAAGACCATCCCTGGCTTCTGGTGGTAATCTGTATGTCCAGTGACACATCTGTGGTTCCTTGTGGCAAGGTGTGGCTTTTGGTGGGAGCCCTTGGCTATGGCATTGGGGTACTCTGTGGCGTGCTGAGATACAGTGGCAATATCTGCCGCCATCTTCATCTGACTCTGTTCTGATGTCCCTGTCTAAGGACACTAGTCAGTCAGTGGCTACCTCACACCTGTAGAGATCCCCATGGCTGTTCTAGCCACAGCATGGGGTTCGGGACTCAACTGTCCTTGTGGGGACCATCAATATCACAAGTCTTTCTGGCTTGCTGTGGGGACCCATCGTGGTAGCCTCTCCCTCCAATTGCACAGCTCTGTGGCTATTTCTGTGGTCCCCAGCTGCCACCATTAACAGCCCCTGCCATCTGCAGGGAGGACAGGGATTTGGGCTGTTACGGTCCCTCCTTGCTTCATTTCCTCCTGGGCCGAGGTAGACTTATCAACCAAGCCTGTCCCACACATATTCAAAATGCAGCTAAAACCAACCAGGGTTTAATTCCAGCACTTGGGAGGGTGAGGCAGGAGTACAGCTGGAAGTTCCAGGCCAGCCTGGTCTATAGGATGAGACTTCAGTTAAAACAAACCAGAAGTTGCCAAGGGTGTCTTTGACTCCCTTGCAAAGTCTCCATGTAGCATTGTGGGTGAGGGTGGGAGTGGGAGTGGGAGGGGTCCCTCCAGCAGCAGCCAGTGGGGCCATGCCCCTCCATCACCAAGGTGCTTATTGGTCTAATGATTTACATGGGCTACATGGGACACTGTTTTGGCCTTGTGGCTGTACCCCCTCTGTGTGTCTTGGTTCAGCTGGGCCAGACTGCCCCCAGGTGGGGGCAGTCTCTGGGTGGCACCTCGCTCTCTGCCATACTGTGTTATCGCTCCCTGTGGCTTTGGTTTTTCCCAGGGTGCCAAACCCCATGGCTCCAGTCAGCCAGTGAGCGGTGTTTACCATCATTGGGCTGGGCAGTGAGTGGTTCATTATGTTCAAAGGAACCTCGGCCCTTTGACCTGCTGAGACCAGCTCTGGTCTCCACCTCACCCCTGTCTGACCAGTCAGCTGCCCTGGCTGCCCATGGCTCTCTGCACTCAGGAAAGGACAAGGCTGGGGTCAGGGCCAGCTGGGGAAGGGGGAGTCCGCTAGGATTGGTAGGTGCCAGCTGGGGAAGGGGGAGTCCGCTAGGATTGGTAGGTGCCCCCAGACCTTTCTCCCCCTCTATCTTGATGTCCCAGAGCTGCAAGGGGGACAATGAAATCCCCGGGAACTGGACATCCTTCAGTCCCCAGTGTGGATGGCATCACAGTTGGCACACTTGCGGTCACGGATGCACACCGAGGCCCTGCCAGCCGCAGCTGGAGGTCTCAGTCACCTTATGTGTATGTGTACCATGTCTGGTACCCACAGAGACCAGCAGGGTGCATCCATCCCCTGGAACTTGAGTTAGGTGTTTGAGTTACCACATGGATGCTGGGAACTGAACCCAGGTCTTCTGCAAAAGCAGTACGTGTCCTTAACCACTGAACCATCCTGCAGCCCCTTGGAGAATCTCTTTGGACTTAAAACAGGGCTCCTGAACCCTGGGTGGCCACCTGCCTGGGATTTTCTGTGCCCTAGTGAGGCACAGTGAGGCAGATACGGTGATGTGAAGACTCCAGTGTTGACAGAGCCTGGAGCTATGGTGGCCCACACTGCATGTGGCCTGGGTGATAGTGCCCTACCACCATGTCACTATGGAACGATACCCAACCTCTGGGTGGGAGCACTGTTTCTTGCCCAATGCAGTTGAGCTCTTCCTGTGGGCTCTGTGAGATAGCCAGTTCTGTAGCCTGTAGGGTGAGACATTCTCAAAATAACTCTTCGCCAGGGTTTGGACTGCAGAAATCTCCTACAGGGAGTAGCTAGTGGCTGCCACCCACTTCCCTTGGTATCTGTCCCTGGAATCCAACGGGACATGTCCAGCCTCCCTGCCCCATTCCTTAACCCAGTGGACACCTGGGCTCTGTCCTATCTCATGAGGCCTGCAGCCTCCCTGTGGGTGGCTGTGCTGTTTTTCCAGTGGTAACCTTTGGAGAGCTGGCTCCTTCCACTTGAATTGCACTGTCTGTCTGTCTGTCTGGCAGAGTCCTGCACAACCTCCGGCTGGATTGGGGCTGCTGCTGCAGGTTGGTCAAGGCTCGGGACACGGCCCCAAGAGGTGCTGGGTTCCAATTTTTTACCTCTCGGTCTGTCTTGAGGTTCTCATGTATCCAAAGATGGCCCTGAACTCTATGTTCCTGAAGATGCCCTTAAATTCCAATTCTCCTGATTGTACCTTCTGCCTGCTGGGCTTGCCGGCCCCTGTTTATGGGGTTCTGGAAGTAGGGGCCTAATGCATGGTAGGCAAGCATTCTAATGCCTGAGCGAAGACACTGAGCCCATAAGCCAAAGAGGAGCAGTGGGCAGGGGATATGCATCCAAATGCATACATCTAAAGCCTTCGTCCCTGTTCACATCCTTCCTCCTCTAAGGCCACATGGGACCTGGTGCTGTGCCCAGGGTACAGTAGCGAACCAGCAGACTTACCTGGTGCATTTGGGGGAAACACCAATCCACAAACAGCCTCTCTAGTGTTAATTTCCATAAGCACCTCAGCTGGGAGGTTGGTGGCATGGATCAGTGCTGATGTCTCTGGATCCTGAGGCTGCATGGCGTCCCATGGGAGACAGGTGCCTCCACCTGACTCAGACAGTTTACATTAATCTCACCTAGGGTGCTGGTGCATGAAGACGGTCATGCCCCGCCCTCACAGGGTCATGCACAGGCATGTGGGTACACATGTCTGTCTGCCTCCCCACTCCCATCCTCAGTACTGTGGGTAATATGCAAATAGATATTCCCCTCGCCTCTGCCATGTCTCCTCCTAG
Seq C2 exon
GCTCCTTCCCTCTTCCAAACTCCCCCAGCTCTGGAGATGAGGTCACGGTTGCTGCCTGTGTTCTTTGGGGAGAGCATCGAGGTGGACCCAGAACCCGCACATGAAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037962:ENSMUST00000036109:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=NA C2=0.243
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(29.2=98.2)
A:
NA
C2:
PF150681=FAM101=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types