MmuINT0065151 @ mm9
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99159711-99162501:-
Coord C1 exon
chr15:99162418-99162501
Coord A exon
chr15:99159864-99162417
Coord C2 exon
chr15:99159711-99159863
Length
2554 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CGTGTCCTCTCATGCTCTAGGTT
3' ss Score
11.18
Exon sequences
Seq C1 exon
GTGGGTGAGGGAGTTTCTCAATGATGAGAACAAAGGCCTGGACGTGCTGGTGGATTACCTGTCATTTGCCCAGTGTTCTGTCAT
Seq A exon
GTAAGTACCACAGGGCAAAGGTTGGGGACTCACTGGGAAGCAGACAGTCCCCATCTATTTAGAAGAAGGATGAGGGCTGGGAATGCAAGCCAGCAGAGCATTGCCTGCCATGTGCTGAGGCTGAGGTGTCAGGCTCCAGCATGGGGGAAATGTGGGGTGGGAAAGAAAAAGGAAGAGTGAGATTCCAACAGAGAAGGTGGGCATGGGCATCCCCAGAGCAGGAGGAAGTAGCTCAAGTGTTGCTGCAGACATGAGCAGGCAAGACAAGGGAATAGCAGGCATCAGCAAGGACTGGAAAGTTAGCTGGAGTAGAAGACATGTTCTAGGGAGCATGAAGAGAACAGTCCGGCAAGGGAGCTTGGAGTCAGAAGCCAAGTGATCCAAGTACCAGGCTGCAGGACCTCCAGGAAATAGCCTGGATCCTCAGGAGACAGGCTCCTTAGGGTTTCATCATTTCAACAACATTGAGTCTTCATGAGGCAGCTTGGGCCCTGAGATGTGAGAGGGTGACTATAGGCCTATTGTTGAGGAAGGCCAGTGAGCGTGGTGACCTTCGACCCGAACAGATCGAATAAGTATTTGGGAGCATTTTCAAGACATCCTTTTCATATGGAGGGAGTTAGCTGTTGGTTAGCACAGGAGAGCAAGCATGGTGAGGTGCAGTGAATGAGAGCTTTTGGAGTCAAAGTTGTGTTGTGCACTATCTGTGGAACCTCAGGTACCTTTGTCCTCCTGACTAAACAAATTAGATGGGAAGGTGTGTATCCCTCTTAGCCTCCTCCCCTGGTGGCTGCTCTGCTGTTAGTTATCACCCAGGTGATAAGCCTGCCTCTAATCTTTGGACATAGAGAAAGAAGGCTAACTGTGATAGTAAATGAAGTTAGCAGCATATGCAGGCTTACACTTTAGTTAGACAAGTCAGCCTAAGGAGGACAGTCCAGGTTTGCTCTCAGCTTCCCATGGGTCCCGAACTGAAAGTCCCTAGTCTGCAGAAATCCGGGTCTTGAGCCTTGGACCTTGCCTAGACATCTGCTTGTCCACTGTCCCTGCCCTTATGGCTCTTCTTGGTCCAGTGTGTTTCCTCCAGGGGACCTAGCAATGTCTCCCAGGTTTAGCTTCCCATCCCACTTGCAGGTCATTCTCTTTAAAGCCAGAGTAACCTGCTTCCCATCCACATCTCTGTGGAAGTCCTACTTCACGGTTCTCCTGTCCCTTTAAATAATCTTTTTATAGAAAAAAATGGGGAAGTTTTGCTTAAGTGAATTTTTAGTTCAGAACTTTTATAGTAAAAAGATATAGATCATTTCCCCAAATATGCCTGTCTTTCTTGAAAAAGCAAACAATCCCATTGCTCCAAACCAAGACTACACTTTGGTGTCCAGGGCAGTCAGTGCCTTTGAAAGTAGAGTCCAGGGAGCAAGAGACAGTGTTTTGGAATGGCTCGAGAGGAAAGGGGTGATCCATGGCTGGGTCACCCTGTTACATGCCACCTGTCAGGACACCTCCTGACCCTGGCAGCCTCTCCTCTGTGGGTACCCTTTGTTCCAGAAAGCCCCAGCCTTTGACACTGGGCGTTCACAGTGGGCAAAATGTCCTATGGGGGAAAGCCTTTGGGAGATATGCCCCAGTTCTTAGAGGCTGGGGTACAGGGCAGGAGGGACCAGTGAGATAGGGGCTGGGGATGTAAGAGAGTGTTGTGTGATGTCAGCTGACCTCTTTGCTCTGGACACTGCTACTTATGGTAACAGACCTGTTGCAGGAAGTAACCAGAAACAACACTCACTTCCTCAGGGGCTAGAATACCTCCCTCTTCACAGTTCTCAGCTCCCAGTTCCAGGGAAGCTGAAGATGAGGAGAAAGACATAGAAGCCTCAGTCATAAAACATCCACCATTAAGAGAGCTAGGCCTGGGATGTAGCTCACTAGGAGACCTCCTATGAGCATACTGGCCTGGCAGGAGACCCCTGGCTCACTCCTCAGCACTGACAAAGCTAAACAAGCCAAACCACAGAAGGCAGTTAGTAGTGTGAGACAGTGGTGTACTGGCTGAGCTTAAAGGGCCACCTCTGGCTTTTCAGAATCCTAATTCTTTTCTTTTCAGACCTGTCCAGCTCTTGATGAGCTGGGCTACTTTAGGGTGCTCGGAGTCTCTTGGTCACTGCCACTGGCCACTGAGTAGGACCTGCAGTTGGCTCATTTCCCTCCAGCATCTTTGGTACAGATATTTAAGTAGAGTCATGGTGATTTAAGATGTCCCATTTGAGGCTGGGAGCACAGGAAGCCTGCCAGCCCTCACAGCCCTTGGGCCATGGAGAAGACTTGAGACTCCCCTCTCCTAGAGCTGTCCAGGCCTCCTCTGCCCTGCCTTACGTTGGTAGCTCCAACCAGGATCAGGTCTCCCATGCCTAACTCTGTCTCCTCTTCTTGCTGCCCCTGCTTTTTGTTTGCCACAGAGGCCTGAAGAGGGGGAGATGGGCTTGCTGGGGGCTTGGCACAGAACTTCCCTTGTATATGTGCCTGCGTGTGTGCATGTGCGTGTCCTCTCATGCTCTAG
Seq C2 exon
GTTTGACTTTGAGGGTCTGGAGAGTGGTGATGACGGTGCATTTGACAAGCTCCGGTCCTGGAGCAGGTCAATCGAGGACCTGCAACCGCCCAACGCCCTGTCGGCCCCCTTCACCAACAGCCTCGCTCGCTCTGCGCGTCAGTCCGTGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008-Fmnl3:NM_011711:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(21.0=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: