MmuINT0065155 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99325854-99327608:-
Coord C1 exon
chr15:99327515-99327608
Coord A exon
chr15:99325929-99327514
Coord C2 exon
chr15:99325854-99325928
Length
1586 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
GAGACTTTTTGCGCATTCAGGTG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GACCAAAGCCCTGGTCTTGGAGCTGCTGGCAGCTGTGTGTTTGGTGCGGGGAGGTCATGAAATCATCCTGGCTGCCTTTGACAATTTCAAAGAG
Seq A exon
GTTGGTCTCTTCTGCATGCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTAAGAGGAGAAGGGGGGTACTAGGTATATCCAATTTACTGGGATCTCTAGTGACTTTAACTGCTGAGCAGCCTGCTTCAGACTGAGACTACAACAAAAGCCAAAGCAAAACTGAAGTCTTTTAGATCTTGTTCCAGGACACCTCCCAGTTTCCAGTTAATGAGGCTCTGGATAGAGTGCAGACTGTGGTTGGAGACATGGCTCAGTAGTCAGAGCCCTTGCTGATCTTGCAGAGGCCTTGAGTTCAGTTTCCAGTATCCAAATGGTGGCTCATAACTGTCTTTAGTTCCAGTTCCAGAGGATTTGGTGCCCCCTTCTGGCCTCCATAGGAACAGCACACACATTCATATACATTCATAGCGGCAAAACACAATCTTCTTTTCTTTTTCCTTTTCATTCCTTCTTCTCCTTCTCCTCTCTCTTCTCTCTTCTCTCTCTTCTCTCCTCTCTCTTCTCTCCTCTCTCTTCTCTCTCTCTCCTCTCTCTTCTCTCTCTCCTCTCTCTCCTCTCTCTCCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTGTCTCTCAGCACAAGCTCCACTCCTCACCCACTGGAGTGCAGCCTGGGCATCTTCACTTTATAAGACTCCTCAGGTGGCTCTGCTGCCATGAGCCTGTGGGTGGGATCCAAAGCAAGAGCAAGTATATCCTCAGGGAAGAAGGCTGTTAGGGAGGGGAGAGAACTCCTGTATGGAATTTTCCCATCCCTAGATCTACGTCTGAAACCCAGTTTGCTTGAACTCGGGATTCCTCAACATCCAGGCACAGCTGTGGTCCCACCCCTTCCTCCTCTCTGGGCCTCTTCCCTAGCATCCATTGTTTGGTTCAGGAAACAGCTCTTCCTCTTTAAAGTTGAGAAACTCACAGGAGCCCCTGGCCCCTTTTTAGCAGAGGGCTTTCCTGCATACTGGTTCCTCAGTGTCCCCTTGGGGCCCCAGCCTTCTGCTGCAGCCATGGCTTGACTCCTTTTTTTCTCTTTTTATATTGTGATGGCTTCAGATCTGCTGTCTGTGTTTCTGGCCTAACTTTAGAGGCACCTAAATCCTAAGCTACACTGGAGTCCTTCACTGTGGTGAGGGTCAGAGACCTAAAGTCAGACTCCAGGGTCTGGGTTTTCTTCTGGTGTCCAAAATGGCACAGTCTCCATATAGAGTTAAAGTTAATTTGGTTTTTGTTTTATTTTTATTTTATTTATATATTTATTGTGATAGGCTTTGTTTGGTCGGTTGGTTTTTGTTTTCTGAGACACATTTTTACCTCATATCACAAGCTGGCCTGAAACTATGGCAGTCCTCCTGCTTTAGCCTCCTGAAGGCCAGCGAGGATGTTAGCCACTGTGCCCCACTGAGTTTTGGCTAAACTTGGTCTGAACCATGTCTTCTCCATCATATTCCTGGGAACCAGAATTTGGGGATTTCACTTCTGCATAGTAGAGATTGTTTCTCTGAGACTTTTTGCGCATTCAG
Seq C2 exon
GTGTGTAAAGAACTGCATCGGTTTGAGAAGCTCATGGAGTATTTCCGAAATGAGGACAGCAACATTGACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(20.0=43.8),PF0636711=Drf_FH3=PU(7.0=43.8)
A:
NA
C2:
PF0636711=Drf_FH3=FE(12.1=100),PF061486=COG2=PU(1.2=8.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types