DreINT0069088 @ danRer10
Intron Retention
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4805344-4806614:-
Coord C1 exon
chr9:4806521-4806614
Coord A exon
chr9:4805419-4806520
Coord C2 exon
chr9:4805344-4805418
Length
1102 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
CTTTTTTTATTGCTTCACAGGTG
3' ss Score
11.27
Exon sequences
Seq C1 exon
GACTAAGGCTCTGGTGTTGGAGCTGCTGGCTGCTGTGTGTTTGGTTCGAGGAGGTCATGAGATCATTCTCTCTGCCTTTGATCATTTTAAAGAG
Seq A exon
GTACACACTCTTAAAGCCCTACTCACACTGTGATTTCAGACAGGTTTTGATCATCTGAGGCAATTTGGGAAAATCCTAAAAGATTCCTGTGGTCTTCGATAATTAGTTTGACATGTTCACTGACAGATTAATGGCTGTTGCGATTAGATTTTCCCTTCGATGAAATTCTGGCAGTGTCAGAAGATTTCAGAGTGTTTTTAGCTATGATATACGTCAACCCAAGAACCAACAGGAGTGCGAATCTGATGTCACAATCAGCACGACAACTTTAAACCACCTCTACTTCCTATTTGTGATTCAAAATAATAGTCATCATACTCAACGCTGCTACAGATAATATTAATTATAGTTTAATTGTTCATTGATCGAGTCTTCGCATTGATCCGTGAGCCAGACTGAACATCCACTGGTGACCTACTCACACCTGCAGATTCTCCACGATGGACGTCCAGCTCTGCACAAGAAATTTGGCCAGAGGAGAAATGGTCCTGTCCAACTGAGGCTAGTTTCTCTCGAGGTTTTTTCACTTTTGTCAATTGGTGAAGTTTCTTTATCGTCACTATGGCCACTGGCTTGCTTGGTTTAGGACTTGCGGAGCTGCGCATCAATGGATTTGCTCTTCAGTGTTTGGACTTTCAGCAGTAGAAAATTAAATTACACTGAACTGAACTGAACTAAACTGAACATCAACTCTGAAAGCTGGACTGACACAGTTTAAATTTACTAAAACTTCTTTGTTAAGCTGCTTTGACACAATCTACACTGTAAAAGCGCTGTAGAAATAAGGATGAATTGAATTGAATAATTGATATGAGATGTGTACACATATTTAAGAAAGCATAATATATTCATTTGTTTAGTGGAAGAATTTCAATTATATTTTATTCCTAGCTATTCTGAGGAGTAGATCAATGCAGTGTGTTATTTCTATGGGGAGGATTGGTGGAATACGTTGAACTACTGCGTTGAGTTTATTAAATGTCACAGAACTCAATAAAGCCAGAAAAGGATTAGGGTGGCATCAAATTCTCATTTCATTGTCTCTTTACATACTTCCAATGTTCCTTCTCGATGCATGAGCTCTTTTTTTATTGCTTCACAG
Seq C2 exon
GTGTGTTTAGAAGAACAGCGCTTCGAGAAGCTCATGGAGTACTTCAAGAATGAAGACAATAACATTGACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586:ENSDART00000016814:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(19.4=43.8),PF0636711=Drf_FH3=PU(6.8=43.8)
A:
NA
C2:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(12.0=92.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]