BtaINT0063171 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43686912-43687137:-
Coord C1 exon
chr2:43687117-43687137
Coord A exon
chr2:43686987-43687116
Coord C2 exon
chr2:43686912-43686986
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAAC
5' ss Score
0.76
3' ss Seq
AATGATAATGTGTGTTTCAGGTT
3' ss Score
9.15
Exon sequences
Seq C1 exon
GCATTAACTAACAGGAGAGAA
Seq A exon
GTAAACAGCGTGTGAGAGGGGGGATAAAATAGATGTTCTGGAAATAATTATTAGTGCTAAAATTTCTGCATCTAATTTTGGAGTGCTTACGTTTGGAATTTCACATGCACAATGATAATGTGTGTTTCAG
Seq C2 exon
GTTTGTGGAGAAAAACAACGCTTTGAGAAGTTGATGGAACATTTCAGGAATGAGGACAATAACATAGATTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PU(3.0=85.7)
A:
NA
C2:
PF0636711=Drf_FH3=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]