Special

MmuINT0071358 @ mm9

Intron Retention

Gene
NA
Description
NA
Coordinates
chr9:105836137-105839746:-
Coord C1 exon
chr9:105839186-105839746
Coord A exon
chr9:105836693-105839185
Coord C2 exon
chr9:105836137-105836692
Length
2493 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GATCTTTTTCTCCCAAACAGGAT
3' ss Score
10.69
Exon sequences
Seq C1 exon
GCTGTGTGGATACAAAGGAGGCCGACATCTATTTTCTCATTGATGGGTCGTCCAGCATCCGTAAGAAAGAGTTTGAGCAAATCCAGATATTTATGTCATCTGTGATAGACATGTTTCCTATCGGCCCCAACAAAGTTCGGGTCGGAGTTGTGCAGTATTCACATAAGAATGAAGTGGAATTTCCTGTCTCTCGCTACACGGATGGCATTGACTTGAAAAAGGCTGTTTTTAACATCAAGCAACTCAAAGGTCTTACATTCACCGGGAAAGCCCTGGATTTCATATTGCCTCTCATAAAGAAGGGAAAAACAGAGAGGACCGACAGAGCCCCCTGTTACCTCATCGTGCTGACTGATGGAAAGTCAAATGACAGCGTTCTCGAACCTGCCAACAGACTGCGGGCTGAGCAGATCACCATTCACGCCATCGGGATTGGCGAGGCAAACAAAACACAGCTGCGGCAGATTGCTGGGAAGGACGAAAGGGTTAACTTCGGGCAGAACTTCGATTCTCTGAAGAGCATAAAAAATGAAATCGTTCACCGCATCTGCTCTGAAAAAG
Seq A exon
GTAAGAGAACCAAAGTGAAACCCAGAAAGGGATGCAGAAAAGTCAGGCGAGGATGGGAGTGGAGCTCAGTGGTAGGACACTTGCTTGGAGTGGATGAGCCCAAGGTTTGAGCCTCAGCAAGGCAGGCAAGCAAGCAAGCAGGCAAGCAAGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAGGCAAGCAAGCAAACACACCCAACAATAACAACAGAACCAAAGTTGGGTATTATAGAAGGTGGCTGAGGTTTTCACTGGAAAGAAAGGACAAGGATGCAAAATATGAGTGATTTTTTTTTTTCCTGAGCCACTGGAAAGAAAAGCAAAGAAGCAAATGTGAAGTACTGTGGGCAGAATCCCATGTCCTGGGATTCATCTTCCTCTTTCCCCTGCTGGGGAACATAACACAGTTGTCATATACAGTTGGGGGTCTAAGAACAAGAAGATGAGAAGGAAGAGTCCCCAGTGTCTCCTGGGTTGACTACAGGAAAAGAGCTTTGGGAGGCACAACATAGAGGGTACCATAGATTCTTCTTCAGAGAAGAAGGTTCTAGGCTGATGTGAGGAGGCTGGCACAGTGTTTGTAGTTCAGGTATCCAGTCATGGACAAGGAAATGGATCCTAACTAGTGAGTGGTGCTTAGAATGCTAAGGAGGCTAGGCCTGAGGGACCAGAGAACAGCAGTACACCCCACAGCCGATGCTGATGGACCGACACAGTATGTCTGTATGCTGGACTAAAGTACGCCAACAGCAACTCTTCAAGCCCAAGGTTACAGAATAGTATTGCTCGTTTTTCTCATCTGCAATAGGCTGGGCAGTTCAGGTCCAGTGGACAGGCAGGGGCTTCCACCCGAGGTGGACCTGAAGTGGTGCTCCTTGCCTCCAAATGTGGACAGTGAGGCCTGAAGGGAGCTTGCCATACTCAGTTGCTTTGATGGTAGCACCCAGAAGAGGCTGGGCTGCTGTTTCTTGGTTACTGGTTCAAATTTAGTTGGGGGGAGGGGGGTCGTCATGTCTTGTTGCAAGGAAGGCTGGGGCACGCATTCTCCTGCTGGGAAAACATCTGCCTGGATGACCCTTGATTAACAGGTAAAAATGGGAAAACATTAATTAGCATTCTAGAAGCAGACCCTATCACGTGTAGAAATAAGGGAGTAGCTTCCGTGGATGTTAAATGCATATAAAAGTATGTAAGCCTTGATATGTGTCGCACACACAAGTGTTGCTAGCAGTTTGCTTTACCTTGGGGCTTTGGTAAAGCCATATTCCTATTGTTTTAATTTTAAAGATTTTAAAAAAAGTTTTATGTGTTGAGTGTTTGGTCTGCATATATGTGTACCATGTAGATGCTATGTTTGCAGAGGTCAGAAGAGGGCATCAGAACCACTGGGGCTGGAGTTATGGATGGCTGTTAGCTACTGTGTGGATGCTGCGAGTTAAATCTGGGTCCTCTGCAAAGACAACAAGTGTTGTAAACTGCTGAACTGTCTCTCCAGCCCTAGTAACACTCATTTTCAAAAGCTTATAGAAGTTGTACATGCATATATATATATATATATATATATATATATATATATATATATGTACACACACATATATGTATATATATACACACATATATATATGTATATATGTATATATACCCAGTTTCTATAAGGGCTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTATGTGAAGGAATAGTCCCTGGTGAATGAATATATGTGTGTACTAAAGCATGTAATATCTTAAAACAAAACAAAACAAAACAAAACCTTGTCACTACAATTTCTAGAGTTGACTTATTTATCAAATAATTTAAAATTATCCCAGAACATAATGTTGCTTCAGGATTACTTAGATTTATGTTTTTCATGACGATTTTGCATTAATTTCATGACTGTGTTTAAATGAAACATTAGTCCCAGAAATGCTGAGAATTGGTTACTCTGGCTCTGTTTAACTTTTAAAATCACCATTACAGCTTTAACGTTTAATTACCTTGAAGCTTGGTACTTCTATGTACTTAAGAGTTATGAATGAATGAGTGATGAATGGGTGAATGATGAATGAATGATGCATGAATGGGTGAATGAATGAATGATGAATGAATGAATGATGAATGAATGAATGATGAATGAATGATGAATGAATGAATGGGTGATTGTATGGATGAAGGATGGGCATTTGGGATTGGCATTTTCTTTTTAAAGTTCCTTGGGTTGTCCTCAGTGAATTTCTGATGCAGGGTTCTTGTCAGGTTTCTTCTACCAAAGTTACAAGTAAAAATGTCCGACGTAACAGCCATGCCCTGGGACAATTTTACATTTTTCTCATAAGTGCATTTGTGATTGCTTACTGTGTCCTCCTACATAAGAACCACACTGATTTCTGATCTTTTTCTCCCAAACAG
Seq C2 exon
GATGTGAAGACATGAAGGCAGACATCATGTTTTTGGTGGACAGTTCTGGAAGCATAGGGCCTACAAATTTTGAGACAATGAAAACTTTCATGAAAAATCTGGTGGGGAAGATTCAGATTGGCGCCGACAGATCCCAAGTCGGTGTTGTTCAATTTCAGTGACTATAACAGGGAAGAATTCCAGCTTAATAAATACTCCACGCATGAGGAAATTTATGCAGCCATAGATAGGATGTCTCCCATCAACAGAAACACTCTGACAGGAGGAGCACTAACCTTTGTAAATGAATACTTTGACCTTTCCAAGGGGGGGCGCCCCCAGGTCAGAAAGTTCCTTATCCTCCTCACAGATGGAAAAGCTCAGGACGAAGTGGGGGGCCCAGCCACGGCTCTCAGGAGCAAAAGTGTGACCATCTTCTCCGTGGGTGTGTATGGGGCCAATAGGGCTCAGCTGGAGGAGATCAGTGGAGATGGCAGTCTGGTTTTCCATGTTGAGAACTTTGACCATCTGAAGGCCATAGAGAGTAAACTCATCTTTCGAGTGTGTGCTCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
-Gm7455:NM_001167923:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000131146





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:130385365-130388579 
LOW PSI
HsaINT0039575
(COL6A5)
Human
(hg19)
chr3:130104208-130107422 
LOW PSI
HsaINT0039575
Rat
(rn6)
chr8:114604207-114606632 
LOW PSI
RnoINT0040256
(Col6a5)
Cow
(bosTau6)
chr1:153638437-153642591 
Chicken
(galGal4)
chr2:42143474-42144049 
GgaINT1001641
([1])
Chicken
(galGal3)
chr2:41563831-41563944 
GgaINT0095482
([2])
Zebrafish
(danRer10)
chr16:36728168-36730593 
LOW PSI
DreINT0050268
(col6a6)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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