MmuINT0072165 @ mm9
Intron Retention
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32160479-32160815:+
Coord C1 exon
chr2:32160479-32160554
Coord A exon
chr2:32160555-32160729
Coord C2 exon
chr2:32160730-32160815
Length
175 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AACCTACTGTCTGCCCCCAGGAG
3' ss Score
10.65
Exon sequences
Seq C1 exon
GAGCGCCTAAAAGCTACCAGCCAGGAGAACCAACAGCTCCAAGCCCAGCTGAGCCTCTTGGTCCTCCCTGGGGAAG
Seq A exon
GTAAGACCACCCAGGAGGAGAGGACTAGAGTTGATGTATTTGGAGAAGCTTTGATTGGGCTGACCCCAGGGTATTCAGTAGGGATACAGAGGTGGGGCTCTGAGCTCTCTTCCCCTAGCCCACTCAGTCTACCTGATGGGATTATTAGAGGAGACAACCTACTGTCTGCCCCCAG
Seq C2 exon
GAGATGTGGACCAGGAGGAAGAAGATGAGGAGGTTCCTCAGTCGAGTCTGGCCATCCCAGAAGACCTAGACAGTAGAGAGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-Golga2:NM_001080968:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.724
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCCTAAAAGCTACCAGC
R:
CATGGCCTCTCTACTGTCTAGGT
Band lengths:
162-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: