MmuINT0072165 @ mm10
Intron Retention
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32304959-32305295:+
Coord C1 exon
chr2:32304959-32305034
Coord A exon
chr2:32305035-32305209
Coord C2 exon
chr2:32305210-32305295
Length
175 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AACCTACTGTCTGCCCCCAGGAG
3' ss Score
10.65
Exon sequences
Seq C1 exon
GAGCGCCTAAAAGCTACCAGCCAGGAGAACCAACAGCTCCAAGCCCAGCTGAGCCTCTTGGTCCTCCCTGGGGAAG
Seq A exon
GTAAGACCACCCAGGAGGAGAGGACTAGAGTTGATGTATTTGGAGAAGCTTTGATTGGGCTGACCCCAGGGTATTCAGTAGGGATACAGAGGTGGGGCTCTGAGCTCTCTTCCCCTAGCCCACTCAGTCTACCTGATGGGATTATTAGAGGAGACAACCTACTGTCTGCCCCCAG
Seq C2 exon
GAGATGTGGACCAGGAGGAAGAAGATGAGGAGGTTCCTCAGTCGAGTCTGGCCATCCCAGAAGACCTAGACAGTAGAGAGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546:ENSMUST00000113377:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.724
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCCTAAAAGCTACCAGC
R:
CATGGCCTCTCTACTGTCTAGGT
Band lengths:
162-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types