RnoINT0066264 @ rn6
Intron Retention
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11334561-11334920:+
Coord C1 exon
chr3:11334561-11334636
Coord A exon
chr3:11334637-11334837
Coord C2 exon
chr3:11334838-11334920
Length
201 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAACTGTCTGCCCCCAGGAGATA
3' ss Score
-13.05
Exon sequences
Seq C1 exon
GAGCGCCTAAAAGCTAGCAGCCAGGAGAACCAACAGCTCCAAGCCCAGCTGAGCCTCTTGGTCCTCCCTGGGGAAG
Seq A exon
GTAAGACCACCCAGGAGGAGAGGACTAGAGTTGATGTATTTGGAGCAGCTTTGATTGGGCATTTTCTAGTCACTGGCTGGTCCTAGGGTAGAGAGTGGGGATGCAGGGGTGGGGCTCTGAGCTCTCCTCCCCCAGCCCACTCTGTCTACCTGCTGGGATTATTAGAGGAGACAGCCTACAGCAACTGTCTGCCCCCAGGAG
Seq C2 exon
ATATGGACCAGGAGGAGCAAGACGAGGAGGTTCCTCAGCCCAGTCTGACCATCCCAGAAGACCTTGTCAGTAGAGAGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884:ENSRNOT00000016341:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.673 A=NA C2=0.717
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCCTAAAAGCTAGCAGC
R:
AGCCTCTCTACTGACAAGGTCT
Band lengths:
156-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]