HsaINT0070395 @ hg19
Intron Retention
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131020734-131021361:-
Coord C1 exon
chr9:131021286-131021361
Coord A exon
chr9:131020850-131021285
Coord C2 exon
chr9:131020734-131020849
Length
436 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCCTCTGGCCACCCCCATAGGAG
3' ss Score
8.06
Exon sequences
Seq C1 exon
GAGCGCCTGGAAGCTGCCACCCAGCAGAATCAGCAGCTACGGGCCCAGTTGAGCCTCATGGCTCACCCTGGGGAAG
Seq A exon
GTACGGGAACCTGCTCACAGGAAGAGGAGAGAGCCCCAGGAAGAAGGGGGGACTGTTAGCAGCGTAGAATTGAGGAGTTGGAAGAGACCTTTAGAACAGCTGGTCATTATGCCAACTGGGTGTCCACACTAAGTTCGGCATCAATATGGTGACTTCCTGGGAGCAGGGCACTACCAGCTTACCTAAGGATGGGTGAACTGGCCCAGGTCAGAAATGAAGCAGGTCAGAACTCCCATGCTGATCGGTAGTGGGACTGCACCTGGGCAGCATAGCGAGCCCTTGGCTCTTAAAAAAGAATAAAATAAAAATAAAGAACAGATGCTTATTTCCCTCTGGGGAGGGGCTGGCCCAGGGTTACACAGTGAGGGTGGGGGCAGAGGTGGGCCCACTGTACCCTTGTTGGGTTGTCTGATGACCCCTCTGGCCACCCCCATAG
Seq C2 exon
GAGATGGACTGGACCGGGAGGAGGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGCGGTGGCAGTACCTCAGCCCATGCCAAGCATCCCGGAGGACCTGGAGAGCCGGGAAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-GOLGA2:NM_004486:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.949
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAAGCTGCCACCCAG
R:
CTTCCCGGCTCTCCAGGTC
Band lengths:
182-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)