BtaINT0002386 @ bosTau6
Intron Retention
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98880744-98881160:-
Coord C1 exon
chr11:98881085-98881160
Coord A exon
chr11:98880833-98881084
Coord C2 exon
chr11:98880744-98880832
Length
252 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CCCCTATCTGTCCCCAACAGGAG
3' ss Score
9.98
Exon sequences
Seq C1 exon
GAGCGCCTGGAAGCTGCCAACCAGCAGAACCAGCAGCTTCAGGCCCAGCTGACCCTCATGGCTGTGCCTGGGGAAG
Seq A exon
GTCAGTGGGGAGGCCTGGAGGGAGGACACCGGCCCGAGGAGCAGGGGGACGTCTGGCAGCATGGCACCGAGTGGTTGTTCATTCCTGAGTTACATGAGGCCACGGGGACTGCGGGTCCCCTTCCCCCCGGCCACTGGCTGGCCCAGGGCTGCAGAGTGAGGTTGGGGGCAGATCTGGGCTCCGAGCTTTCTTCCAGGCCTGCTCCGCCTCCGTGATTGGGGGGCCTGAAGACCCCCTATCTGTCCCCAACAG
Seq C2 exon
GAGATGGACTGGAGAGTGAGGAGCAGGATGAGGAGGCTCCGAGGCCTAAGCTGAGCGTGCCGGAGGAGCTGGAGAGCCGAGAGGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317:ENSBTAT00000015044:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(4.0=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAAGCTGCCAACC
R:
CCTCTCGGCTCTCCAGCTC
Band lengths:
156-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development