MmuINT0072812 @ mm9
Intron Retention
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31065969-31072087:+
Coord C1 exon
chr2:31065969-31066090
Coord A exon
chr2:31066091-31069763
Coord C2 exon
chr2:31069764-31072087
Length
3673 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGC
5' ss Score
5.25
3' ss Seq
CTTTGGCTTTTCTTTTTCAGAGT
3' ss Score
11.62
Exon sequences
Seq C1 exon
CTGCTGGATGAAACAGCCACGCTGGTGTTCTTTGTCCTGACGGGGTATAAATTTCGCCCAGCTTCAGATAACCCCTACCTGCAGCTCTCTCAGGAAGATGATGACCTGGAGATGGAGTCCGT
Seq A exon
GTAAGCTGCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCTGTTGAATGGTATGGTATGCAGGGGCCCTGCTCTCAGCACTCTCAGCTTGGAGGTGCTCCCTCTATTTTTAGTGGAAGGATGTGGACACTGGAGCCCCTGGTGTGCTTTGCTTAGTTTGAAGTGCAGTGACTGCCAGCCATTGCTCAGTCCTGTCAGAGACAATCAGAACTTACCACCCTATTATATATCCTTGGAGCAGCTCCCAGTGATCCAGTGGCAAGAGTCTGAAAGTGTTCTGGGCCAGTTTAAAATGGGTTATCCGGCTGCGAGCATTGCTACTGGTATTTGAAAATTGCATCTTCTGGGTCATCATAGGTTGACAGCAGACTGCACCTCCAACCTGCATCTGAGTGATGGGGCTAGGGTGAGGTTCAGGGAAGGCAGTTGTTTTCCAGATAGATCATAACCTGTCTGCCAGCTCTGACTCTATTGAGCTGAGCTGTGTGTGTGTGTGATGGCCACCTCAGGCCGAGATCCCCACTGCCCCGCACTTTTACCTTTCTCCTCTCCACAACTCAAAGGCTGAGGTGAACCCAGGCTGGGCTGCCAGGCACATCAGACCTCGTAGAGCAGCTCTTGGTGCTGGCTGCCCCACTAGGGCAGTGCATGCAAGGTAGATCCTGGGATGGGCCCTGAGCAAGTCACTCCCGTGCAGCAATACCCTTTCCACACAGTGGGAAGGCAGGAGGACCTCCAACTGTGCCTTCACCAGAGGGAGCAGTCATTGCAAGTGGAGGCAGAAAGGGCTACAGATCCAAGTCAGCCTACCCTTCCCTGCAGTGCCAGCTGTGGGGCCGAGTGGCTGGGTCCTAGTGCCCTCCACTGAGCTGAACTGTGGAGTGCCCCTGCGGGAGCTGTGCTCACCATCTTCCATTGTGCCTTGGGCAGGGGGTTGTTTGATCCATGGCAGTGGTTTATTTTTTTGAGACAGGGTCTCACTATGTAGCCATGAATGGCCTAGAACTCTATATAGATCAAACTGGCCTTAAACTCTCAGATACACTTGTCTCTCTCCCGAGTGCTAAGATTAAAAGAGTGAGCCACCATGTCTGACCTTCATGGCAGTGTTTAAAGTTTTACTTTGGTATCAGTCTGAATGACTTTATGACATAGGTCTGGCAGGAAGGAAGAGGAAGGTGCACAGACTCCGTAACTAAAGAGGGTACATTCTGCAGTTTGGCAAGGCATAGGCCAGGGCAAATGTTGGAGATGTCAGTAACCCCTTGGTGCTCTCAGTTACCCGCCTGTGACAAGGAGCCAGGTTATGCTGGGTGTTCTCTGGGGCTTCATGGAGCCACGAAGTGACGGGAGTGCTCCAGTGGCAGAGAGGAGGTACACAGGGTTACTTATCTCGGGCCCTGGCACCAGCAGGCAGCCCAGCGCAGTCTGGGCTCTGAGGGGAAAGGAAGCAGGAGCTCAGGAACTTATGGAGGCAAAGCACCTTAGTTCAGGAAGGATACTGGGGCATAGGGTGGGGCTGAGCCCAGGACAGAGACCTCATCTAATGTATACAAGGCTCTGGTCTCATCTCTAGCACTAAGGAAGGAGTGAGGGAGAGAGGCGGACAAAAGCTGTTGAAAGCTCTGGAGAGTGAGAAGATGTGAAGGCCCTCATGGGCCTGCTGCCTGCTGCCAGCGGTGCCCTCCTGTAGTGAGCAGTGGGCTTACTATGGCTCTCAGACAGGCAAATGGTGCAGCTGCTGGGGCTGTGGAGTGCCTTCTTGATGGCACCTCTCAAGTCCTCCAGAGATAACTCGTCCCAGAGGCAAGCAGAGCCTGGCTCAGAAGGTCTTTAGCTCTGTAAAGCATCAGCCACTAGGTCTGGTCCTACCACAGAAGACACTCCAGCATGTACAAGAACTCTGCCCCGTGCCCTCTACCCTCTTACACACTCTCAGAGCAAGTCCAAGGCCTTTCTGACAAGCCCCGAGGGTGTGTCCAGGCCCCAGGTCATTCCATTGTCTCTGCTCCTCTGCTTGGGAGCCAACGTCTGGGACCGGCTTCCATCCTTGTGCTGGCCCAGCGTGCCTGTGGAGCCTGCGTGGCTGTCAAATGGCTTTCTGTTTAGCCTAGGAGCCTAGGGGCTTGCATTCCCTTCCTGTTTCTTTTACATCTCTCTTTGGGCCACCAATTTTGGTTGCAAACTTCATTGTAAAACAAAAACAGTAAGTTTAAAAGTATTGGGAGCGGTTTCACTGACCGGCCAGCCTTGGTTGTGTCAGCCACACTGTACACACTTACTCTCTGATTGTTTCTGACCTGGGAGGTGGGGAGGGTAGAGAGGGCTCCAAGTCTCCCCAGGTTCCTATTCCACAGGGGAGTCAGGAGAATCAGATGCCCGGGATCCTCTTACCGAGGCCTCTCACAGTATAACCCTCCAAGTATGTATTAGGCAAAGAAATAGCTGTGTCATAGACAGCTTTAGCCAAGCTAAAAGAAGAGCTGTATTCTTTCTGTACTTTGGGTTTGGGAAGATGTGGGGCTCTGTAAAGCAGGGAAGAGGGACAGATATAAGTGAAGGCAGTGTGGGTCCCCAGCACCTTTCTGTCCTTGGTACACTATTGGCTGGCCCTGTGGGCCGTGCTGCTCACACCTGCTTAGGAACTGAGGCCTCCCAAGAAGTCTCACTTCCCACCTATGACCTGGGAGGCTCCAGAGCCTGTCATTGGATCCACAGAGCTGCAGCTCCTCCCGCCCCCCTCTGTCCCAGTGGCCATCTCTTAACCTGAGTTTTCTCGAGTTCCTTCCTGCACAGGCTGTGAGAACACGCTGGTGACTGTGGTCCAGGCTACTGCGCAGATAGTGTGTGTTTGCAGGGTTTGTAGCCTGATGGAGCTGCACTCCATGGTCAGGCCACCCTTCTTCCCTGTCCTCAGAGAGTGGTTGAACATCTCATGGGCCCAGCCTTGTGTCTCAGCTGTCCATCTTGGTACCACTGCCCTAGTCTACGGGCTGCTCTCTTGCCTTCCCCCTTCTGCACATTCTCGGGGCTGCAGGATCACCCTAGGGAGCTCGTGAAGTCAGGGGAGCCACAACCACTAGCGGGTTGAGAGCAGCAGCCCAGCCCAGCAGTGCAGGTGGGCTCAGAGCTTGGAAACCTGAGGGAAAGGTGGCATTGAACTGGCAGCCAGGGGAGGGGCAGGGAGAGCGTGGGTAGGGTCATTGTGGAAAGATCTGGGGCAGGCAGCAGCAGCCTGGAGAGAACCTAAGGGCTTCTTGGAATGCCCGGGGAAGGAAGAGCAGATCTCGAGGAAGTAGTGTTAACTGTCCTAGCGTTAAGCACAGGCAGAGTTTTGAACACCAAACCTGTGCTTCTGTCCCGTGCCTTGGGAATGTCTGTGTCTGCCCCACTAGTTAGCCATCTTTCCTGAATGCCTGTAACCCCGATGCTGACCTGAGTGTGGCCTCAAGTCTCTGGCCACTGCGGTGAAATTAATGCTGGCAGTGAGGACAACTTGATCGGGCATGTGGGGAATATTTTTCTTGGAAGGTAAGAATTAGGCTCCGAAAGGTCAAGTGGCCTGGCCAGTAGCACACAGCTGTGAGGGAAGGCCAGGTCCCCACCTTAGCCTAGAGTCCCCTACTGTAGGGCTCTGAGTCACCTGACACTTTGGCTTTTCTTTTTCAG
Seq C2 exon
AGTGACGACATCGGGTGTGATGGAGAATATGAAGAAGGTGAAGAAAGTGAGCAACGGTGCTGTGGAGCCCCAGGGCAGCTGGGAAGGCACCGCGTGACAGCAGGGCTGAGGACTGCTGTCAATGAAACTAGCTTATTCATAGCCAAGCAGTGAGCAAGCGCGTTCCTGACAGAACGATGGCATCTCCCAGCGGTGACACTCCAGCCAGCGCTCAGCGCTCATGCTGAGCAAGTGCCACGGACACACATTTTTGTACTCTTAGGATCTGGATTGTGGTGTGGGCTACAGGCAGCTAGGACTGCCCTCAGTGAGGGCGGGAAGGGGCTTAGAGGAGGAGTAAAGGACTGGAGTCTGATTTACCTTGCTAATTGGGAGCCTGGGTCTGTGCCAAGGAGCCCTGTGGCTGCTACTCAGAAAGGCTATGGGGTGGGGGAGCGGGTCTGCGCTGGTCAGTGCTGTGGAGGCTGGGGAGGGTGTGACTCGCTGCTCAGCCTAGCAGTTTATAAGGCTTTGGGTTCAATTCCTAGCACCAGGGTGGGGGAGAAGGATTTACTTTGGGAACTAGACAGATATCTACCAAGGGCATAGGAGAAAGGGATTGTCAGCCTTTGGGGACAAGAACCACAGAAATGAATGAAATTCTTTCAGATAGCCAAATAGACACCCTAGGTGGCATGACACCTGTCCAGGGAGGGCCACTGGTCCCCAAGCACCACTCTAAATGTCCTCGCCCTGATGTGACCTACACCAGTGGTGCTAGAGGCCAGCAGGGAGGACCCAGTACACAGCTGGCTGAAGGGAGAAAGGCCTTGGAGCTCCAGAAGTGCGCTCCAGCTGGCTCTCCTGACTCCATTCCCCTGCCTGCCCAGAGCAGCCGCCTGGCTTCCTCTCCTTCCACCTGTGTCTTCTGATCCGAATCCGAGAAAACAGAACTTTCCTGAAGGAGCAGCTGAGGACAGAAAGGGTAGTGTCTAAACGAACGCTTAGGTAAGCATCCTTCCACAGATTGCATGGGCCAGGCAGGACCTCTGAGCCTCAACTACGTAGTCCAAGTATGCATGAAGGGAGTGAGTGTGTTTGAGCCACTCATGCTCAGAGACCTGAAACAGCCAGATCTGCTCAGAGATTGGGCAGGAACACCAGCGGCTGCCTGCAGAAGGCATGTGACAAAGTCACAGGAGACCAGTTCGGCACCTCAGAGCCGCTTAGTGCCCAGGACTTGCAGGTGAGTCGCACCTTCAAGGAACAGGCGCTTCCTGGGGTGAGTTACTCTACCTCCCAGTGCAGAAGATCTCTGTCCTGAAGACAGTGTGTCTGTCTCCACACCCCCAGCCCAAGTCCATGTCCTAAGCCATCAGTGAGAAGCCGCTGCTTGTGCTGCCCTGGCAGGTCCGTCCCTACCACAGGTGTTCCGACAGGCCTGAAGGATCTATTTAAGGGACTCTTTCTCCTCGTTCCGTTTGTTTGTTTGTTTGTTTGTTTGTTGTGTTTATACTTGTTTAAAGTGTGTGGTGGGGAAGGAGTTGTTGAGGAGATGGGGCATTAGTGCTTTGTTTTCTGCACGTAAGCACTGCAGAAGTGTGTTCCTCTGGTGACATCTAAGCCACAGCCTGCCTCTCAGAGGGCAGGGTCTTTTTGGAAGGGGCCTCGTTTCACTTGCTGGGTTTTAGGAGAGCCAGAGGGGAGAAGTTGTACCACCCAGCCCACAGAGCTGTCTGGGTGCACAGCCGAGCGGGTGGAGGGACAGCCTGCTCCTTCCAGGGCATGGGTGCACGGGCTGGGAGGTGTGCTACAGCAGTATCCTCCCAAGTCTTGCCCTGGAACTGCTGTAGGTGGGAAGCCAGGCATGGCGGGGGAATGGGAAGCCTAACCTGGGGCTGGGAAGACTGGCCTGGTGCCCAGGCTGTGGAAAGGAAAGCTTCTAGCCCTTTATCCTGCACTGTAAGCGTATCTCGTATCTCGTCTCCATCACTTGAGAGCTGTGAGCCAGCATTCCGCGGTGTCCTTGGGTAGAGGAGTCTGATTGGAGTCCAGCCGCCCCAGCTCACGAGCTGTCCTCTGCAGCCTTGAGTCTTAGCCCACCTGGCTTCACACAGCCCTGTTTCAGTGGTAAAGCCCATGTGTTGGAGGGGCTGAGCAAAAATGGGGTGTGCATTGCACTGCCACTCTGGTATTAACAGCTCTGCTCTGTGTCTCTCCCCCTTCTGCCTGTGTGAGGTATCCATACTTTGAGAGTGCTGTGGACTGGAAGCTGTGGGCTGTGACATTTAATAAAGTGTGGTAGATAATTATTTCTTGGACAACAAGAGCAAGTGTTCAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-Gpr107:NM_178760:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: