BtaINT0068393 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100480626-100484528:+
Coord C1 exon
chr11:100480626-100480747
Coord A exon
chr11:100480748-100484431
Coord C2 exon
chr11:100484432-100484528
Length
3684 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
TTGTTTTTTCCCTCACTCAGAGT
3' ss Score
8.95
Exon sequences
Seq C1 exon
CTCCTGGATGAAATGGCCACGCTGGTGTTCTTTGTTCTCACGGGGTATAAGTTCCGTCCAGCTTCAGACAACCCATACCTACAACTTTCTCAGGAAGAAGATGACTTGGAAATGGAATCTGT
Seq A exon
GTAAGAATCTCCTTTCTTCCCTCCCCAGCCTCGCGCCTGCCTCATTGAGCAGCGTGGTGTGAACAGGAGCAGCTGCTCTCTGCAGATTATCGCCCCCCTTTCTTCCCTCCCCGGCCTTGCGCCTGCCTCACTGAGCAGCGTGGTGTGAACGGGAGCAGCTGCTCTCTGCAGATTATCGCCCCCCTTTCTTCCCTCCCCAGCCTTGCGCCTGCCTCACTGAGCAGCGTGGTGTGAACGGGAGCAGCTGCTGCTCTCTGCAGATTATCGCCCCCCTTCCTTCCCTCCCCGGCTTCGCGCCTGCCTCACTGAGCAGCGTGGTGTGAACGGGAGCAGCTGCTCTCTGCAGATTATTGCCCCCCTTTCTTCCCTCTCCGGCCTCGCGCCTGCCTCACTGAGCAGCGTGGTGTGAACGGGAGCAGCTGCTGCTCTCTGCAGATTATCGCCCCCCTTCCTTCCCTCCCCGGCCTCGCGCCTGCCTCACTGAGCAGCGTGGTGTGAATGGGAGCAGCTGCTCTCTGCAGATTATCACTCCAGAGCTGGTCCCTCTGCGTTTAGGTGCAGGAGATGGACACTCAGGCCCCAGGCTTGTGTATTCAGTTTGAGGTCCAGTATCTGCCAAGCATCACTTAGTCTTTTCAGGGGAAGTAGAACTTGCCATCATCTGAGGCATCCTTGGAGCCTGCTGCCAGCAACTTAGCAGCAAGATCTTGGGGATATCCTTGGCCTGTTCAGAACTACTGGGGATGCGTAGCCCCACTTCCCATTGGGCCTGCCGGTGGAAGCTCAGGTCTGACAGTGTAATCGTCCAAGTCATCTGTAGGTCTGCTAATGATCCTCGCATGGCCTTCATTGTCAGATAACTTGATGGCTTTTCCCAGTTAGCACAGTGACTTGACCTATATCTGAGCTGTAAAAAGAGCTTTTCTGAGTCACAGGCTAAGTGACTCTAGGGTCCTGTTTTCCGGGAAGGGGCAGTCATTTTCTAGAGAAGTGAATAGTGATTGAGAATATTTGCTTGTAAACTGATGAGTTCTGATGGGCTAGGTCCGCAGTTGTATCTGATGACGCGCCTGCGGCTGAGTTCCTCCCTCCCTGTCCACTCTTTGAAGTGTGTGGCCTCCAGCACAGGCAGCTTTTCTCTCTTCCCAGTTCAGAGGCTGAGCCTTGACCCACGGCAGGCTCTGCTGGGCTGGCGGGCAGGTCGGGCAGCGTAGGATGCATTCAGCTCCTCTGTGGAAATAGTAATTGGAAGCAGAGCCTACTTCTGGGCCCCAAACACCAGCTTCCTGTTGTGCAGAGGAAGAAACCCCTGTGGAGGGGAGCGCAGGGGAACCGCCAGATATACCTTTTCTAGAAGTAACAGAATCCGAGCCAGGACCGCTGGTTGAAAAGGCACAGATGAGAGTCCACCTGGAGTTGAGCATGCGTGTGTGCTAAGTTGCTCAGTCGTGTCTGACTCTTTGCAACCCTGTGGACTGCAGTCCACCAGGCTCCTCTGTCCATGGGGTTCTCCAGATAAGAATACTGCAGTGGGTTGCCATGCCTTCCTCCAGGGAATCTTTCTGACCCAGGGATCGCACTGGCGTCTCTTATGTCTCTTGCATTGGCAGGTGGGTTCTATACCACCAGCACCACCTGGGGAGCCCAGAGTTAAGTATACATTTATTTTTTGCTGTAATTTGTTTGGGACCACATTTTACAAAACGCCTCTTCCTGTTAGGTTGCTTTTCAGAAACTCCCCTGCCCTCCTCCCTCCACCTGCATCTTGCTGCTGTTCCTCATCTTTCAATACAAGCTTCAGAGCATCCCCCCGTCCCCTACCCAACCCCGGTAGAGGTGGTTCCTCATCCTGGGCCGTCATCAGGCCTGCGTCCTGGCACTTCCATCCTGTATGTCTGGGGTGGCTCTGCGTGTCCATCTGAAAGACTGTCCGTTCTGCTGGGCACTAGGCCCCCTGAGAGCACCAGTTCCAGCTTCATCACTCTCTGTTCTCACCCCAGGCCTGTCATGATAGAGGGAATGTGGTTTTCTCATTTGGGCCATCATGTGGCAAGGAGTATTTCCTATGGGAAAGCAAGGGAGGAAAGGCTGTCCCAAGCCTGCCGTCTGAGCCATCCCTGGGTTGTGATGCCTGGTGCCTTGCCCTCGGCGTCCGCATGTGTTGAGCTCCTCTGCCTTCTTAACACGGTGCGGCAGCCACAGAACCAACACTTTACACTCACCAGCAGCCTCTGCAGGAATCCTTCGGTTCCCACAGGAACCACCTCCCGGTCGTGGCTTTACCAGAAGTACAGATAACCCAAGAGAAAAGCCCAGCCCTGGGGGAGGACTGCATGACCCCGAGGCTTGGTCACAGCAGCAACATGACAACAGAAAAGAAGGGAGAAAAACTTCTCTTTCCTCACTCCACGTGCAGTCGTTTGTCTACTGTATAGATCCAGCTGGACAGACACTAGATGTGCCTTGTGTAGAGCCACTGAGTTGCCATTTGTAGGTAACAGGATCTGGGAGTTGGTGGGGGCATGGGAAGGGTCCTTGGAGAGAGAGTGCTGGGTTGGCTGTGAATTTTACTTCACTGATTAGGAAATTCCTCTTGGTCCACGATGGGGGACAGAGGTGCCTCATGTTTCTTAGAGTACTTCAGAGATGCTGGGCCGGGGTGTTTGTTTTTAAGGCTCTTTCGTAGAACGTTTTTAGCTTCATAACATTGAACAGAATTGAACAGAGGATGCAGATATTCCCTCCGTGTGCCCCCCACCCCACATGTGCGTAGCTTCCTCCATCAGCAGCATCCCCTCCACAGGGCCCTTTCCTTACAACTGATGAACCTGCGCTGACTCACCATCGTAACCCCAGCCCGTAGTTTACAGCAGGGCTCGCTCTTGGTGTTGCGCACTCTGCGGGTTTGGACAGATGTGTACCCGCCGTTACAGAGGCGTACAGCGTCGCTGCGGCGCCCTGAAGTCCCCCGGGCTCCGCCGACCGGGGGAGCTCGTGTCTGCTTGGTGTTCCTGTGGTGGAGCCACGCGGCTGCGTCGTGAACACGGAGAGCCTCAGGCTCTGTCTGGCTCCCACTTTGTGAGGCAGGAGGCTGTCCTCTCCTGGACCCTACCTCCTCAAGGGATGTCGTGATTCACTCCTAGTCTCTGTAACCATCAAAGAGTCTTTGGGCCCAGAAGGTTCCTCCAAACCCGTGGTTCTGTCCCAGGTCTCAGAAGTGAGCCACTGTGGCTGTTTAGTATAAAGTATCTATAGCTGATTAGCTTTTTTTCCCCAGAATGTTAATTACGACACAGATAATAGTGTCATAATTGTGACTAGTTTTTTATATATATATATATATATATATATATATATATAACTTTGTGACGGGAAGAGAGAGAGATTAACGTTGGTTGTGCTAACAGCTGACGTGCCGTGACTCAGCACAGCAGAGCACCTGGCTGCCTGTCATGACAGTTCTAGGAAGTCAGGATCATGTTTATCCTGCAGCACAAGGCGGGGTCACGTGACCAGGCACGCTCACACAGCTCAGCTCGCATCAAGCAGGCCAGGATTTGAACCTGGGTCTGTCCGACTTCAGAGCCAACACCCTGCACCCCTGGTTGCCGCTGGGCTGCAGTGCGGGCAGCCTTTCACTCAAAGACTGAGGTTTCCCTCGTTGTTGTTTTTTCCCTCACTCAG
Seq C2 exon
AGTGACGACATCAGGGGTAATGGAGAATATGAAGAAAGTCAAGAAGGTGACCAATGGCTCGGTGGAGCCACAGGCCGACTGGGAAGGCAGCGCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204:ENSBTAT00000005512:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development