RnoINT0066899 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10632896-10639003:-
Coord C1 exon
chr3:10638882-10639003
Coord A exon
chr3:10635234-10638881
Coord C2 exon
chr3:10632896-10635233
Length
3648 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
ACACTTGTTGTCTTGTTCAGAGT
3' ss Score
9.08
Exon sequences
Seq C1 exon
CTGCTGGATGAAACAGCCACACTGGTGTTCTTTGTCCTGACGGGGTATAAATTTCGCCCAGCTTCAGATAACCCCTACCTGCAGCTCTCTCAGGAAGAAGATGACCTGGAGATGGAGTCTGT
Seq A exon
GTAAGCTGCCCTTCCCTTCCCTTCCTCCCTCCCTTCTGCCGAGCTGAAAGGCTTGGTATGCAGTGGGCCCCCTGCTCTCAGCATCCTGCCTTTGGAGGTGGTGCCTCTATATTTAGTAGAAGGATAGGGACACTGGAGCCCCTGGTGTGCTTAGCTTAGTTTGAAGTGCAGTGTCTGCCAGCCATTGCTCAGTCTTGTCAGGAAAAATCAGAACTCACCATCTTATTACGTGTCATTGGAGCAGCTCCCAGTGACCCAGTGGCAGGAGCTGGAAGTGTTCTGGGCCAGTTTAAAATGGGCTATCCGGCTGCTATCATTGCTACTGGTATTTGAAATTGGAATCTTCTGTGTCACCAAAGATTGACAGCAGACAGCACCTCCAACCAGCATCTGAGTGACAGGCAGGGTTAGGGTTAGGTTCAGGAAGCAGTTGTTGTCCAGATGGATCATAACCCACTGTCCTGCACTTTTGCCTTTCTCCTCTCCACAACTCAGAGGCTGAGGTAGAGCCCAGGCTGGGCTGGCAGGCACATCAGGCCCCATAGAGCAGCTCTTGGTACTGGCTGTCCCACTAGGGCAGTGAGTGCAAGGCAGCTCCAGGGATGGGCCCTGAGCCAGTCTCACTCCCCATGCAGCAATACCATTTCCACACGGGAAGGAGGAGGGACAGTCATTGCACGGGGCTGTAGGAAGAGGTACAGATACAGGTCAGCTGCTGGTCTTCCTACCTTTCCCTGCAACACGCCCGCTGTGGGGCTGAGTGACTGGGTCACTGTGCCCTCCACTGAGCTGAACTGGGAAGAGCTCCTGTGGGAGCTGTGCCCCCATGTTCTGTCGTGTGTGTCTCACGGCAGTGATTTATGTTTTGAGACAGGGTCTCACTGTGTAGCCCTGGCTAGCCTAGAACTCTTTATATAGATCAGGCTAGCCTAGAACTCTTTATATAGATCGGGCTAGCCTTGAACTCTCAGAGATACACCTGTCTTTCTCCCCAGTGCTGAGATGAAAAGTGAGCCACCATGCCTGACCTTTGTGGTGCCGTTTGAAGTTTTCCTTTGGTGTCAGTCTGAGAATGGTGAACTTTATGACATGGGTCTGAGCACGTTTGTTCCTGAGGAAGGAACAGGAGGTGCAGACTCCAGCCTTGTAACTGAAGAGCAGATTCTGCACTTTGGCAAGGCAGAGGCCGGGGAAATGTTGGAGATGGAGATAACCTGTTGGTGGTCTCAGTTTACCCTCCTGTGACAAGGAACCAGGTGTATGCTGGGTGTTTCCTGGGGCTTTGTGGAGCCAAAGCATGGGAGTGACAGGAGTGCTCTGGTGGCAGAGAGGCTGTGTGCTTAGCAGTATGCAGGGTTATTTATCTAGAGCCCTGGCAGGGAGCCCCAGTGCAGTCTGGGCTCTGAGGTGAAAGGAAGCAGGAGCTAAGGAGCTGATGGAGGCCTTAACTCAGTAAGGACACTGGACTGGGATCACTGGGACATAGGGTGGGGCTGAGCCCACCACAAAGACCTTATCTAGTGTATACAAGGCTCTGGTTCCTTCTCTAGCACTAAGGAAGGAGAGAAGGAGAGAGGCAGGCAAGAAAGAAGGAACTATTGAGAAAGCTCTGGACAGTGAGAAGACAGAACAGACCCCCATGGCCCTGCTGCCTACCACCTCCGCCAGCAGCACTCTCCTTCTGTAGTGAGCTGTGGGCTTAGTGTGGCTCTCAGACAAGTGAATGGTGCAGCACCTTCTTGATGGCACCTCTTAAGTCCTCCAGAAATAACTTTTCCCAGAGGCAAGCAGAACCTGGCCTCAGAAGGTCTTCAGCTCTGTAAAACATCAGCCACATTGGATGTTTGCCTTCTATAAAAGCAACCAGGTCTGATCCTACCACAGAAGACACTCCAGCTTGTGCAAGAACTCTGTCCTGTGCCCTGTACCCTCCTTTCACACCCTCAGAGCAAGTCCACAGCCTTCCTGACAAGCCCCAAGGGTGCACTAGCCTCCACCTGACTCCTACTTGTGTGCCCAAGCCCTGTGTCTGTGCTCCTCTGCTTGGGAACCAACATCAAGGACCGGCTTCCATCCTTGTGCTGCCCCCCACCCCCACTTGCCTGTGGTGCCTGTGTGGCTGTCACCCCATAAGTCGTATGGCTTTCTGTTCACCTGGGAAGGAAGTAACAGGGGTTTGCTCTCTCTTCCTGTTTCTTTTACATTTCTCCTTGAGCCTACCAATTTTGGTTGCAAACTTCATTGTAAAACAAAAACAGTAAGTTAAAAGTATTTGGGAGACTTTCACCAGCTTGGTAGTGTCTGCCACGCTGCACATGCTTACGATCTGATGGTTTCTGACCTGGTGGGGAGGGCAGAGAGGGCTCCAAGTCTCCCCGTGCTCCCCTTCCACAGAGGAGACAGGAGAATCGGATGCCCAGCATCCTCTTACCCAGGCCTCTCACAGTGCAACCCTCCAAGTATGTAGTAGGCAAAGAAACAGATGTGGCATCATGGGCAGCTTCAGCCAAGCTGAGTGAAGAACTTCATTCATTCTAGACTGGGTTTGGGGCCATGATGGGGTCTCTCAGGGAAGGGGGACAGATAATGAAGAGACAGTGTGGGTCCCCAGCACCTTTCTGTCCTCTGTACACTACTGGCTGGCTCTGTGGACTGTGCTGCTCAAACCTGCTTAGGAGCCGTGACCCCCTTTCTGTCCCAGTGGCCATCGCTTAATCTGCGCGTTCTAGAGCTCCTTCCTACGCAGGGGCTGTAAGAACAGGCTGGTGACTGGTTTAGGCTATTGGGCAGATGTTGTGTTTGTGTGGAAACGGGACACGTGGTGCAGTGTCTGCAGCCTGACGGCGCTGCACTCCATGTGATCCATCCACCCAGGCCCAGCAGCAGCACTGGGAAGCTGGCTAGGCCCTCCCTGTCCTCAGAGGGTGGGCAAGCATCTCATGGACCCAGCCTTAGTGTCAGTTGCCCATCTTGGTGTCACTGCCCTGCTCTGTGGGCTGCTCTCTTGCCTTTCCTTTCTGCACATTGTCAGGGCTGCAGGATCACCCTAGACTGCTTGTGAAGTCTAGACTCTGTCCTGCTCGGAGGGAGCCCAGCCCAGCAGTGTGGTGGGCCAAGAGCTTGGAAGCCTAAGTGAAGGATGACATTGAGCTGGCAGCTAGGGAGGGGCAGAAGAGAGAGGGGCATGGGGTGGCTGTGCAGAGAGCTGGGCCAGGCAGAGCAGTATGGACTCCTCCCACCCACGGGCTTCTTAGAATGGCTGGGAACAGCAGACCATGAGGAAGTAGTGTTAACTGTCCATGGTAGGCAGCCTGTCCAAGTGTGTGGTTCTGTCCTGTGCCTCGAGAATGACTGTGTCTGCCCCTCTAGTTAGCTTTCTTTTCTGACTGTCCTGTCCCCATGATGTTGACATGAGTGTGGCCACTGTAGTGAGGGAGAGAGAGAAGTTAATGTTAGCAGTGATGACAACTTGATCAGGCTTGTGGGGTGGCTCTGGAAGGTAAGAATTCACCACCATACTTATACTCAGAACGATCAAGACACCTGGCCAGTAGCACACAGCAGGGGCGGGGGAGGCCAGGTTCCCACCTTGGTCTAGAGTCCCCTACTATGGGTTCTGGGTCACCTGACACTTGTTGTCTTGTTCAG
Seq C2 exon
AGTGACGACGTCAGGAGTAATGGAGAACATGAAGAAGGTGAAGAAAGTGAGCAATGGTGCTGTGGAGCCCCAGGGCAGCTGGGAAGGCACCGCGTGACAGCGCAGCTGAGGACCGCAGGCCGTCAATGAACCTAGCTTATCCATAGCCCTATCAGTGAGCACGCCTGTTCCTGACAGACGATGGCATCTCCCAGCAGCAACACCCCGGCGCTCAGCACCATGGCCGAGCCGAGTGCTATGGACACACACTTTTGTACTCTTAGGGATCTGGATTGAGGTGGGCTACAGGCAGTGAGGACTGCCCTCAGTGAGGGCGGAGGCTTAGAGGAGGAGTAAAGACTGTCTGTCTGATTTACCTTGCTAATTGGGAGCCTGGGTCTGTGCAGGGGAGCCCCCAGTGGCTGCTACTCAGAAAGGCTGTGGGTGTGGCACGGGTCTGCCACTCGCTGGTCACAGTTCTGTGGAGGCTGGGAGGATGTGACTCACTGCTTGGCCTAGCATTTACGAGGCTTTGGGTTCAATTCCTAGTGCCAGGGTGGGGGGAAAAGAAGTTACTTTGGGACTAGTCAGGTATCTACCAAGGGCACAGAGAAGAGAAAGAGATTGTCAGCCTTTGGGAACAAGAACAACAGAAATGATTGAAATTCTTTTAAATAGCCAATAAACCCCTAGGTGGCAGAAGACACCTGTCCAGGGTCACTGGCCCCCAGGCACCACTCTAAATGTCCCTGCCCCTGATGTGACCTACAACAGTGGTGCTAGAGGCCAGAGGGAGGGAGGGAGGGGGCCTGTTACATGGCTGGCTGCAGGGGAGAAGAGCCTTGGCTCTCCAGAAGTGTTCTCCAGTTGGCTCTCAGGACTCCATCCCCTGGCTGCCTGCCCAGAGCAGCCGCCTGGCTTCCTCTCCTTCCACCTGTGTCTTCTGATCCGAGAAAACAGTTTTCCTGAAGGAGCAGCCGAGGACAGAAAGGGTAGTCTCTAAACAAACACTTAGGTTAAGCATCTTCCACAGCTCGCATGGGCCAGGCAGGACCTCTGAGCCTCAGCTATAGTCCAAGCATGCGTGAAGGAAGTGTTTGAGCCACTCATGCTCAGAGACCTGAGGCAGCCGGGTCTGCTCAGAGCTTGGACAGGGACACCAGCGGCACCTGCGGAAGGCCTGTGAGGGGCCACAGGAGACCAGCTCAGCACCTCAGAGCTGCTGCCTGCCCAGAACTGGCGGGCGAGTTGCACCTTCAAGGAACAGGCACTTCCGGGAGGGGGGTGAGTTACTCCACCTCCCAGTGCAGAAGACAAAGGTCTGGTCTCCACACCACACCCCAAGTCCCTGTCCTGTGCCACCAGTGAGAAGCTGCTGTCTGCTGCCCTAGCAGGTCCGTCACTACCGCAGGTGCTCCATCTTGAGAAAGGTCGACAGGCCTGAAGGATCCACCTAAAGGACCTTTTTCTCCTGTTTTGTTTGCTTTGTTTATACTTGTTTAAAGTATGTGGTGGGAAGGGAGTGTCGAGGAGACAAGGTGTTAATGCTTTGTCTTCTGCACATAAGCACTCCTCCAGCACTGCAGAAGTGTGTCCCTGTGGTGACTCTAAGCCACAGCTGTCCCTCAGAGGGCGCGATCTTTATGGAAGGAGCCTCCTTTCACTTGCTGGGTTTTAATAAGGCCACTCTGACAGAGAGCAGAGGGAGCTGTGTACAACCCAGCCACAGAGCTCTCTGGGTGCACAGCTGAGCGGCTATGGGAGACAGCCCGCTCCTTCCAGAGCATGGGTGCACAGGCAGGGAGGTGTGCTACAGCAGCGGCCCTCCCAAGTCCTGCCCTGTGACTGCTGTAGGTGGGAAGCCAGGCATGTTGGGGGTTGTGGTGGGGAGGGGGGATCAGAAGCCTAACATGGGGCTGGGAAGAACTGGCCTGGTGCCCAGGCTGTGGAAAGGAAAACTCCCAGCCCTCAGCATGCACTGTAAGGTGTCTGTCTCATCTGCATCGCTTGAGAGCTGGGAGCCCGCATTCAGCAGTGTCCTTGGGTAGAGGAGTCTGATTGGCATCCAGCCGCCCCAGTTCATGAGCTGCCCTCTGCAGCCTTGAGTCTTAGCCTACCCAGCTCCACAACCGTGTTTGAGTGGTGAAGCCCTTGTGTTGGAGGGGCTGAGCAGAAATGGGGTGTACATTGCACTGCCACTGTGGTATTAATAGCTCTGTGTTGTGTCCCCACCCCCACCCCCCATCTTCTGCCTGCGTGAGGTATCCATACTTGTTTTGAGAGTGCTGTGGACTGGAAGCTGTGGGCTGTGACATTTAATAAAGTGTGGATTTTGTTAGATAATTATTTCTTGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PD(8.2=58.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]