MmuINT0078346 @ mm10
Intron Retention
Gene
ENSMUSG00000035697 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:80021389-80021683:+
Coord C1 exon
chr10:80021389-80021455
Coord A exon
chr10:80021456-80021545
Coord C2 exon
chr10:80021546-80021683
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGAGCACTGGCCCCCAAAGGTT
3' ss Score
3.46
Exon sequences
Seq C1 exon
TCCATGGAGAACCTTTATGGGGCTGGCACGGAGGGGCCCCCACATAACGTGGAGGAATGTGAAGAAG
Seq A exon
GTGAGTGTCTCCGGGTGTGGGGCTGGGGAGGCAGGAGGTGGCGGGGCCTCGAGAGGTGTGGACTTCCGGACTGAGCACTGGCCCCCAAAG
Seq C2 exon
GTTGCCTGCCCCCCGAAGAGGTGGACATGCTTCTGCAGCGATGCGAAGGGGGTGTGGACGCTGCACTGCAGTATGCAAAAGACATGGCCAGGTACATGAAGGACCTCATCAGCTACCTGGAGAAGAGGACCACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697:ENSMUST00000099501:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061118=FCH=PU(40.0=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCTTTATGGGGCTGGC
R:
CCAGGTAGCTGATGAGGTCCT
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types