RnoINT0020271 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12736566-12736862:-
Coord C1 exon
chr7:12736796-12736862
Coord A exon
chr7:12736704-12736795
Coord C2 exon
chr7:12736566-12736703
Length
92 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGAGCACTGCCTCCCGTAGGTT
3' ss Score
6.96
Exon sequences
Seq C1 exon
TTGGTGGAGAACCTTTATGGGTCAGGCAGTGAGGGGCCCCCACACAGCGTGGAGGATTGTGAAGAAG
Seq A exon
GTGAGTGTCTCTGGGGACTGGGGCTGGGTAGGCAGGAGGTGGCAGGGACCATGAGAGGTGTGGACATCAGAACTGAGCACTGCCTCCCGTAG
Seq C2 exon
GTTGCCTGCCCCCCGAGGAGGTGGACATGCTTCTCCAGCGCTGCGAGGGAGGTGTGGACGCCGCGCTGCAGTATGCAAAAGACATGGCCAGGTACATGAAGGACCTCATCGGCTACCTGGAGAAGAGGACCACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061118=FCH=PU(39.1=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGGGTCAGGCAGTGAGGG
R:
TTCTCCAGGTAGCCGATGAGG
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]