MmuINT0078350 @ mm10
Intron Retention
Gene
ENSMUSG00000035697 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:80022275-80024851:+
Coord C1 exon
chr10:80022275-80022355
Coord A exon
chr10:80022356-80024662
Coord C2 exon
chr10:80024663-80024851
Length
2307 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
GATCCTCTCTCCTCTCACAGCAA
3' ss Score
9.91
Exon sequences
Seq C1 exon
CCCCTGACGCTGCGGCGGTTGGAGCATGAGAGGCGCAGGAAGGAGATCAAAGAATCTTGGCATCGAGCACAGAGGAAGCTG
Seq A exon
GTAAGGGCAGCGGGGGTTGTGGCCAGTGCCCCCCTCGTTGGTCGATGCAGGTTCCCTGTGCTTGCAAGAGCAGTCATTGCTGAGATGCTGAGACAACCAGCCCCAGCAGGGCACTCAAGAGTCCCACACATTGTCAGCTGTTCAGAAATTCGGAGAGAAAAGAGTGCAGTCCCCGCCTCGGTTGGTGCACACTCCATGTACCCCATTTTTCTTTTGGGGCATTTAAAGGCATGGAGGTGGCCTGGGGGGCATGCCTCAGTGGGTAAAGCACCTGACAGGAGAACATGGGGTCCTGAGTCACGGGGTTAGCATCCCCATAAAACCAGGAATGGCAGCCAGGCGAGGTGGCACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAGGCGGGGGGGACAAAAACCAGGCATGGCATCCTGCACCTGGAACCCCAGCACCCAACCCAGGTGGGATGGGTGGTTCTCGGGCTCCATAGCCAGAAAGCCTAACTGAATCTGGGCTCACTGGGACACCTGTCTCAGAAAACAAGATGTGTGTGGGGGTGTGGCCGGTAGTGGTGCCTGCCTTTAATCCTAGTACTCGGGAGGCAGAGGCAGGAGGCTCTCTGTCCTGGTCCAGTCAGGGCTGCATAGTGAGGCTCTGCCTCAAAACTGACAGATACACAGCAGACAGAGATGGTGTCCAGCCTCACGGTAACAAGCCTGCGCCCCCCACCCCTGTCTCTGATTGGAGTTCGAAAATGAATGAGTCATTGGGGGCAGGCACCTGCTTCCCTCGCAGCTCCAGCCCCTCTTCTCAGTTTCTGTGAATCCTCTCTGTCTATATTCTCTGCTCAGAGTAGATGACACAGGGGATTGTTATTGATTTCCGAGAGCTCTGTACATATTATGGAATACAAACTACAATACTGTTGGGAGTCCCTCCCTCAAATTTTGTCATTTGATACTTTAATTGTACTAATTTGACATTTTTTAAAAAGCTATCAGGACAGGCTGGTGGGAACTGTTTAGTTTTAACACTAGGAGGCAGAGGCAGGCAGATCTCTGGGAGTTCAAGGCCAGCCTGGGTTACATAGTGAGTTCAGGATAGCGAGAGCTGTGTAGAAAGACCTTGTCTAAAAAAAAAAAAAAAAAAAAAAAAAGCCAGTAGAGTTTTCAGATATTGTTTACAGTTGTTTGCTTAGTGGGTGGGTGGGGATGGAAATGCCACAGCGTTATCGGGAGGTCAGAGAACAGCTGGTGGAGGTGAGTTCTCTCCTTCCACCATGCGGGCGCAGGGATTGGATTGAGGTCCTTCGGCTTGGGGACAAGTGCCTCTACCCACCCAGACAGTGGTTCTCAGGCTTCCTATTCCTAATGCAGCCTGCGACCCTATAATAAATACAGCACATGTTGTGCTGGCCCACAGCCATGAATTTGATGTGTTGCTGCTTCATAACTAATTTTGCTACTGTTATGAATCATGATATCTGATATGCTGCTCCCCGACCTAAAGGGGTCGTGACCCACAGGTTGAGAACCGCTGTGCTGGCAGCAGCAGCTCCTAGCTTTGCTGTGAGGACTATCTGTCTGTCTGTCTGCCTGTCTGTCTGTCTATTTGTATTTTGGGTTTTTCGGGGCAACATCTCTGTGTAGTCCTGGTTGTCCTGGAACTTGCTCTGTAGACCTGGCAGGCCTTGAACTCCCAGAGATCCACCTGCCTCTGCCTTCCTAGTGCTGGGATTAAAGGTGTGCACCACTGCCTGGCTTGAGGTTTGTTTGTTTGTTTTGAGAATCCAGGCTTAATGTGAGCTCTTCCTCTGAGACCCTGGAGTATCCCCTACAGTCCCTATTCTTCATGTCTAGGTTCTGACTTTCAGACTGTGGGGTGTGGGCTCTCCCCACCCAGACCAGTTACTTTGTGACTCAGTGCTTCCTGTCACCCCAGGGTGCTAGGCTTCCTGCCTGGGCGGCTCTCTGTTTTCATCTGTAAGACAGGAAGTGAAACTTACCGAGACCAGGCATGGGGAGAGGGGAGATGTGTTTCAGTTTGTGTTTTTTGTTCAGCTCTGAGTCGTGCCTCAGTTTCCCCGTGGGGTCCTACTGCAGATGCTGCCAGTGTGTGCTGTCAATGGTCCCCTGCTGGCTTGCTGGGAATGTGGGGTCCTTGCTGGTGAGGAGGGAGGGTGTGCAGAGCCAGGGTGAGGCACAAGCTGGATCCTCTCTCCTCTCACAG
Seq C2 exon
CAAGAGGCAGAGGCCAACCTGCGCAAGGCCAAACAGGGCTACAAACAACGCTGTGAAGACCACGACAAGGCCCGGCTCCAGGTGGCCAAGGCTGAGGAGGAACAACAGGGCACAGGCCCAGGCGCAGGGACTGCGGCCTCTAAGGCCCTGGACAAGAGGCGCAGACTGGAGGAAGAGGCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697:ENSMUST00000099501:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types