RnoINT0020254 @ rn6
Intron Retention
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12733626-12736026:-
Coord C1 exon
chr7:12735946-12736026
Coord A exon
chr7:12733815-12735945
Coord C2 exon
chr7:12733626-12733814
Length
2131 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
GATCCTCTCTCCTCTCACAGCAA
3' ss Score
9.91
Exon sequences
Seq C1 exon
CCCCTGACCCTGCGGCGGTTGGAGCATGAGAGACGCAGGAAGGAGATCAAAGAATCCTGGCATCGTGCACAGAGGAAGCTG
Seq A exon
GTAGGGGTGGCAGGGGTGCAGCCAGTGCCCCTGCATTGGTCGCTGCAGGTTCCCTGCGCTTGCAAAGAGTAGTCGTTGCTGAGAAGCTCCAGCCTCAGCAGGGCACTCAAGAGCCCCCCACACTTGAGCTGTTGAGAAAATCTGGAGAGAAACTGAGTGCAGTGTGAGCCTCAGTGTATATTCCATGTACACTGCTGGTCTCATTTTTTTTTTTTTCTTTTGGGCCTTCTAAAGGCATGGAGGTGGCCTGGGGGACATGCCTCAGTGGGTAAAGCACCTGTCAGGAGAACGTGGGGCTCTGAACCACGTGACCAGCATCCTCATAAAACCAGGCGTAGCATCCCACCCCTGTAACCCCAGCACCCAACCCTGATGGGATGGGTGGTTCTCGGGGCTCAGTGGCCAGAAAGCCTAACACAGGCAGACAGACGGTGTCCAGCCTTGCAGCTCCTCCACACTTAACTTCTCAGCCATTGCTCTAGCAGCCACTGATAACAAGCCCATGCCCCACACCTGTCTCTGATTGGGGTTCCAAAGTGAATGGGTGATTGGGGGTGTGCACCCTGCTTTCTTCCTAGTGCTAGCCCCACTTCTCCATTTCTGTGAATCCTCTGTCTATGTCCTTTGCTTAAAGTGGATTACACGGGGAATTGTTATTGATTCCCCAGAGCTCTGTACATGTTGTGGAATACAAACTGCAGTACTCTTGGGAGTTCCGCTCCCAAATTCCATCACTTGATATTTTAATTGTAATAATTTGACATTTTAAAAAAAGCTATCAAGACAGGCTGGTGGGAATGAGTTTAATTTTATCACTGGGAGTCAGAGGCAGAGGCAGGCAGATCTCTGGGACTTCAAGGCCAGCCTGGGCTACATAGTGAGCTCAGGACAGCCAGAGCTGTGTAGAAAGACCCTGTCTTTAAAAGAGAAAGGAAGATAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGGAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAGAAAGAAATCTACTAGAGGTTAGTAGATTTTTCAGATATTTAAGTTTGTAGAACCGGTGGGCATGCGTTCTCTCCTTCTGCTCTGCGTGTGCAGGGATTGGCTTGAGGTCCTTAGGGTTGGGGGCAAGCGGCTTAACCTGCTTTACAGTGGTTCTCAACCTTCCTAATGCTGTTACCGTATAATACAGTTCCTCAGACTGTGGTGACCCACAAGCACAAAGTTGTTTTTGTTGTTGCTGTGTAACTGACTTCGCTACTGTCGTGAGTTGTGATATGAGCATCTGACATGCAGCTCCCTGACCTGAAGGGCTCCTGACCCACAGGTTGAGAACCACTGTGCTGGGCCGTCTTATCAGCAGACTCTTGCTTTGCTCTGAGGATTTTTGTTTGTTCTGTCTGTCTGTCCGTCCGTCCGCCCGCCCGTCCGTCCGTCCGTCCATCCATCCATCCATCTGTATTTTGTTTTGTTTTGGTTTTTTTTTTTTTTTTTTTTTTTGTGGCAGCGTCTCTATGTAGCCTTGGCCATCCTGAAACTTGATCTGTAGACCAGGCTGGCCTTGAACTCACAGAGATCTGCCTGCCTCTGCCTTCGAGTGCTGGGATTAAAGGCGTGCACCACTGCCTGGCTTGAGGTTTATTTATTTTTTAGTTTGGGAATGAATCCAGAGTTAATGTGAGCTCTCCCTCTGAGACCTTGGAGTCTCACCTAGAGTCCCTGGCTTTCATGTCTAGGTTTTTGACTTTCAGACTGTGGGGTGTGGTTCCCCACCCAGACCCATTACTTTGTGACTCAGTGCTTCCTGTCGGCCCTGGGCCAGGCTTCCTGCCTGGGCGCTCGTTTTTTTATCTGTAAGACAGGAAGTGAAACTCCCTGAGACCTGGAGTGGGGAGCAGGGAGATGTGTTTCAGTTTGTGTTCTTGACCAGCTCTGAGCCATGTCTCAGTTTCCCTGTGGGGTCCCACTGCACATGCTCCCAAGGGTCTGCTCTCAATGGTCCCCTGCTGGCTGGCTGGGAATGTGGGGTCCTTGCTGGTGAGAAAGGAGGGAGGGCAGAGCCAGCGTGAGGCAGAGGCTGGATCCTCTCTCCTCTCACAG
Seq C2 exon
CAAGAGGCAGAGGCCAACCTGCGCAAGGCTAAACAGGGCTACAAACAACGTTGTGAAGACCACGACAAGGCCCGGCTCCAGGTGGCCAAGGCTGAGGAGGAACAACAGGGCACAGGGCCAGGAGCAGGGACTGCAGCCTCCAAGGCCCTGGACAAGAGGCGGAGGCTGGAGGAAGAGGCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220:ENSRNOT00000060648:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=0.968
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]