MmuINT0084422 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108327679-108328297:+
Coord C1 exon
chr6:108327679-108327839
Coord A exon
chr6:108327840-108328155
Coord C2 exon
chr6:108328156-108328297
Length
316 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCAAGCTCTGTCTCTTAAGGTC
3' ss Score
4.9
Exon sequences
Seq C1 exon
ATTGGTACCTCTCCCCTGAAGGAGGACAAGGAAGCATTTGCCATAGTTCCTGTTTCCCCTGCTGAGGTTCGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATCGCTGGGAAGTTGGAAAAGGGCACAATCACCCAGAATGAGAGAAG
Seq A exon
GTGAGGGTGTCCTCACGGGTGGCTAGATGGGAAAAGCCCTTGGGAGCAAGAGCATCAAGACTGCAGAGCTGTGTGCGAGAGGGGCAGGCCTGAGCTTTTGCGGGCAGCTTCAATTTATGATGTCCAGATATGGTTACTTTTATCTTCTCATATGTCTTGTTTTGTTTCAGTTGTATTATGCAGCTCCGTTAGCCCCAGCTGCTAGAAGGCTGAGTTCTCTTCTGTTTACCTTGTTCTTAAAGTCTGGCCCTTTCTAGGCAAGGCTTTTAGCCTGTAGAAGTTTGAACCCTAACTTTAGCAAGCTCTGTCTCTTAAG
Seq C2 exon
GTCTGTCACGAAGCTTTTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACTAACTCTGGCCAAGACGTGCTTGAAGTTGTCTTCTCTAAGCCCAATCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.4=27.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTACCTCTCCCCTGAAGG
R:
CTGCTTGAGAATATTCTGTTCCCTCA
Band lengths:
302-618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: