GgaINT0021952 @ galGal4
Intron Retention
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18436441-18437449:+
Coord C1 exon
chr12:18436441-18436601
Coord A exon
chr12:18436602-18437307
Coord C2 exon
chr12:18437308-18437449
Length
706 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
AACTTGTGACTTTTCTGTAGATC
3' ss Score
6.69
Exon sequences
Seq C1 exon
ATTGGTACTTCTCCAGTAAAAGAGGACAAAGAAGCTTTTGCTATAGTACCAGTTTCTCCTGCAGAGGTTCGGGACTTGGACTTTGCAAACGATGCAAGTAAGGTCTTAGGTTCCATTGCTGGCAAACTGGAAAAGGGAACAATAACCCAGAATGAAAGACG
Seq A exon
GTAAGAAAACAAGAAGTCGGTTCGGATAACGTTTGCTTTACTCAATACCTATTTCTTTTATTACTGATGTGTGCACACAGCGGAGGTTCTCAAGCAGTGTTCTGTCAGCCCTTCACTGTCACTTTGTGAAAGGAGAGCATGGGAACTGTTGTTGTGAACGTAGGGGAATAATCCGTAGCATGCCTCTCTTGATGGGCTTTGCAAAATGAGTGTGGGAATTTATAATCCATCTTGTGAAGAGTGAACATATGACATGGCAAATCCTCTGGCAATGTCTTTGAAAAATATGTGGCCACTCAAAAAGAATGTGCAGTCTGCTGTGTAAAAGCAGGGGCCCATGTGCTTCTGTAGGCAGTGTCTTTCATTTGGCCTCGAGGAGATTATAACCTGATCTATTTTTTTCTGACAATTCAAAAGAACTGCTGAAAACCTAGTGATCATATGGTGGCCTTAAAGTTATGTCATTGTCTTAATGCTTCTGCGGTTTGACTATTGTACCTGTACTATTGTCACAGGCTGTAACAATAGGGAGCACTGGTTCCTAACGTTAAATTTCATACAAACCTTGGTGCTTTATCTGACATCTGGGTTAGTCTCTAATGTTTTTTGTCCCTTAACATTATGAAATCTGTGTAACCTCACACTGTTGTTCTTTTAACAGATAGAATTTGTAGTCTTGTATTAACAACTTGTGACTTTTCTGTAG
Seq C2 exon
ATCTGTTACCAAATTGTTGGAGGATTTGGTCTACTTTGTTACTGGTGGAACTAATTCTGGGCAAGACGTCCTTGAAGTGGTATTTTCTAAACCTAATAGAGAACGGCAAAAACTGATGAGAGAACAGAATATTCTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.4=27.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTACTTCTCCAGTAAAAGAGGAC
R:
CTGCTTTAGAATATTCTGTTCTCTCA
Band lengths:
302-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]