RnoINT0076627 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140410876-140411537:+
Coord C1 exon
chr4:140410876-140411036
Coord A exon
chr4:140411037-140411395
Coord C2 exon
chr4:140411396-140411537
Length
359 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCAAGCTCTGTCTCTTAAGGTC
3' ss Score
4.9
Exon sequences
Seq C1 exon
ATTGGTACCTCTCCCCTGAAGGAGGACAAGGAAGCTTTTGCCATAGTCCCCGTTTCTCCTGCTGAGGTTCGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATCGCTGGGAAGTTGGAAAAGGGCACCATCACCCAGAATGAGAGAAG
Seq A exon
GTGAGGGTGTCCTGCATGTGCTGACACAGCAGTCCTCACTGGTGGCTAGACTTGGAATAGTCCTTGGGGAGCAAGAGTATCAGGACTCTGAAGAGCTATGTGTGGGAGGGGCAGGTCTGAGCTTTCGGGGGCAGCTTTGATTTATGATTTCCAGCAATGGGTACTTTTATTTCCGCATGTGCTTTGTTTGTTTGTGTTGTAGTGTTGTGCAGCTCAGTGAGCCTCAGCTGTGATTTCAAGGCTGCTAGAAAACTGTGTTCTCTTCTGTTTGCCTTGTTCTTAAAGCCTGGATCTTACCAGGCAAGGCTTTTAGCCTCTAGAATGTTGAAGCCTGACTTTAGCAAGCTCTGTCTCTTAAG
Seq C2 exon
GTCTGTCACCAAGCTGCTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACGAACTCTGGCCAAGACGTGCTTGAAGTAGTCTTCTCTAAGCCCAACCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.4=27.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTACCTCTCCCCTGAAGG
R:
CTGCTTGAGAATATTCTGTTCCCTCA
Band lengths:
302-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]