DreINT0083626 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35682572-35683449:-
Coord C1 exon
chr11:35683289-35683449
Coord A exon
chr11:35682714-35683288
Coord C2 exon
chr11:35682572-35682713
Length
575 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTCTCTGTTGGTTTTTGTAGGTT
3' ss Score
9.93
Exon sequences
Seq C1 exon
ATCGGCACGTCTGCCGTCAAAGAAGATAAAGAGGCCTTCGCCATTGTGCCAGTTCCTCCTGCAGAGGTGAGGGATCTGGACTTTGCTAATGATGCCAGTAAAGTGTTGGCATCCATCGCTGGCAAGCTAGAGAAGGGCACAATCACCCAGAATGAAAGAAG
Seq A exon
GTATGGAGCAGGAATGTGTTTGGGAAGTGTTTCTGTCCTCATGTGACCCCGGACTAAATGCTTTTGCCAGACCTAGGTTTCAATGCAGTAATTGATTACAGTGGAAAAAACACTTCCAGGAGGCTTTCCAGGCCAAAACTGGCATTTTGAAGCATTTACCAGCACATTTAGTGAAAAAATGTTGGATTTTGTCTAAGAAATAGAAGGTCATACTTTACAAGTAGGTTGCATTACTTGATGTATTTACTAACAAGAACTAATTATGAGCAATACTTGTAAAGCATTTATTAATCATAGTTCACCATATACTAATGCAATAGTATAATAAAATCCATATTCATGCTTGTGTCAATGTTCCATGAGTTAACATGAACTAACAATGAACAGTATTTTTTATTAATTAAATGAACAAATACTGCATTAAATGTATGGTTTATAGTTTGTTCATGTTAGTAAATGCATTAATCAACATTAACTAATACAACCTTATTGTAAGTGTTACCAATAGGGACTGTTTAGAGATGAATCCATCATTATAATTAATATGACATTCGTTTCTCTGTTGGTTTTTGTAG
Seq C2 exon
GTTTGTCACTAAGCTGCTGGAGGATCTCGTGTTTTTTGTAGTGGACATTCCCAACAATGGACAGGATGTGTTGGAGATCATGGTCAATAAACCCAATCGTGAACGACAGAAACTCATGAGAGAGCAGAACATCCTAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.1=27.8)
A:
NA
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGCCGTCAAAGAAGATA
R:
TGTTTTAGGATGTTCTGCTCTCTCA
Band lengths:
295-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]