MmuINT0086536 @ mm10
Intron Retention
Gene
ENSMUSG00000007670 | Khsrp
Description
KH-type splicing regulatory protein [Source:MGI Symbol;Acc:MGI:1336214]
Coordinates
chr17:57027049-57027856:-
Coord C1 exon
chr17:57027817-57027856
Coord A exon
chr17:57027099-57027816
Coord C2 exon
chr17:57027049-57027098
Length
718 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTAAGTGTCTCTTCCCACAGGAC
3' ss Score
10.82
Exon sequences
Seq C1 exon
CGATTGGTTCTCAACTGGGACCCATCCATCCTCCCCCCAG
Seq A exon
GTAAGCGGAACCAGGGATGCTGGTGGGCGGGGGAAAGGGTGCACTTGTGTCCATGTGTGTTTGGGGGTGTGTGTGGATTGTGGATACTGTAACAACGTGGTTTATCACTGGCTGAGTAGTCAGATGTTCCCAGGGTGATTAGAACCTGTAGAGGATGCTGTTGTCTGGCTGCCTCAGATGGCCTGGGGTGAATATGACTAGGTTGTTGAGATAGGCTACTGGTTTTCTTTGAATGAGTTTGTAGTTTCATGAAATACAATAGATACTAACTGGAGAATGAGGTGAACTATGTGACAAGCCCCCTTTTTAATGATATGTGGACTGTTAGTGTGGTATGAAATTGTATACAAGGTGAGGAAGCTGTAACTCGGTCAATAGAGCACTCACCCTGGATTCCCTCCCAAATATCCTGCCTCAGAACAAACAAAAAACCAGGCAACCACGTGGGAGGTTAAGGCAGGGGGATCAGGAATTCAAAAGCCATCCTGAGCTATATGGAGTTCGTCTCCAAAACCAAATTCAAGTGTTCTTACCTAAGGAAATGGGATTGCCATGGGCCACTTCTAGACTCTGGCCCTGAAGCCATTGTTCTTGATGTAGTAGCAGGGTGTGCAGCAAAAACCCTGAAGCTTCAAAGGGCTACCGGGCTTTTATTTCCAGGAAAGCTGTGTGGTCTCTTCTCTAGCTGGAGGCTGATGTTAAGTGTCTCTTCCCACAG
Seq C2 exon
GACCTCAATGACAGAAGAGTATAGGGTTCCGGATGGCATGGTGGGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007670:ENSMUST00000007814:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types