RnoINT0078742 @ rn6
Intron Retention
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10016873-10017857:+
Coord C1 exon
chr9:10016873-10016912
Coord A exon
chr9:10016913-10017807
Coord C2 exon
chr9:10017808-10017857
Length
895 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTGAGTGTCTCTTCCCACAGGAC
3' ss Score
10.64
Exon sequences
Seq C1 exon
CAATTGGTTCTCAGCTGGGACCCATCCATCCTCCCCCCAG
Seq A exon
GTAAGCTGTTTATTGGCCTCCTGCTGACTCTGTTTTAGGGGCTGGCATAGAGGTGTCTCTGGGGCCAGGGGATGATGGAGGGTGGGGAAAGGGGTGCACTTGTGTCCATGAGTGTGCTCTGTGAACGGTGTGGGGGTGTGGATTGTAGCCATTGTAGCAACATGGTTTAGCACTGGCTATGAGTGGTCAGATGCTCCCAGGGGGATTAGAACCTGTGGAGTATGCTGCTGTCTGGCTGCCTCAGATGGCCTGGGATAAATGTGATTGGGCTGTTGAGATGGGCCACTTGTTTTCTTTGAATGAGTCTGTAATTCATGAAATACAAGGGACACTAACTAGAGAATGAGATGAACTATGTGACAAGCCTCCTTTTTACTGGTATGTGGACTGTCAGTGTGGTATAAAATGTGCAAGGTAGAGAAGCCGTACATAACTCAGGCAATAGAGCACTCATCCTGTATTCCCTCCCAAATACCCTGCCTCAAAACAAACAAACAAAAAAACAAAAAAACAGGCAAAACGATACACATCTACCATCTTACCGCATGGGAGGTTAAGGCAGGGGGTCAGAAATTCAAAGCCAGGGGGTCGGGGATTTGGCTCAGTGGTAGAGCCCTGGGTTCGGTCCCCAGCTCTGGAAAAAAAAAAAATTCAAAGCCAGCCTGAGCTGAGCTATAAATGTTTTCCAAAACCAAATTCAAGTGTTCTTACCCGAGGAAATGGGATTGCAGTGGGTCATTTCTAGACTCTGGCCCTGAAGCCATTGCCCTTGTGTAGTAGCAGTATGTGCAGCAAAGACCTGGAGCTTCAAAGGGCTACCAGGCCTTTATTTCCAAGGAAAGCTGTGTGGTTTTTCCTCTAGCTGGAGGCTGATGTTGAGTGTCTCTTCCCACAG
Seq C2 exon
GACCTCAATGACAGAAGAGTATAGGGTTCCGGACGGCATGGTGGGCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628:ENSRNOT00000072033:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]