MmuINT0088121 @ mm10
Intron Retention
Gene
ENSMUSG00000109764 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:45272316-45273651:-
Coord C1 exon
chr8:45273476-45273651
Coord A exon
chr8:45272412-45273475
Coord C2 exon
chr8:45272316-45272411
Length
1064 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
TTCATGAAATTTTCTTTCAGAAT
3' ss Score
8.08
Exon sequences
Seq C1 exon
AATTCCCTATCCAGATGTGTGGCGTATATATGGCGGAATTCTTAGTCTGTCCGAGATTACGAAAGAAACGCCTTCCTCGAGAATAAAGGAGCTTATTATTCATCAGGAATACAAAGTCTCAGAAGGCAATTATGATATTGCCTTAATAAAGCTTCAGACGCCCCTGAATTATACTG
Seq A exon
GTATGCAGCATATTTAAGAGGAACCTGCACAACTCAATGGTATTGGTGTCAATTTCCACTTCAGTTTGCATGAGAAGAGAGATCTGCAGCAATTGTCTTTGTGTCCTGGTTGGTGAGGCTGAGGGAGAGATGAGGCCACCTGGGCAGTAGAAATCCCGTGTCTTCCCATACATTCACTGCTATCTGAGGGGCAAAAAAGCTTCATTACTTTCTCAGAGTGGCATGCAACTGAGTGTATGGTATTGGTCTAGGAAAGATTTTGACATCTGGGGACATTGGGCATCTTCTGACAAGATTGGCAGAATGACTATGGCTTAGGAATATACAACCATATGAAAGTGAACGGGACTAGATGTTAGTGCCCAAGAATACCCTGGTTGACAATGGGGGGACACGGAGCATGGAGCTGCTTTGGAGGCACATCACTCCACAGGAATGGAATGTCTGCCAACACCATTACCTGCAAGTGTCTGTGAACAGTCATGAGACCTTAGACAGCTTGGCTTTCCTCCTTCCACCTCTAATATCTGCTGCACGCGTGCTGATCTCCGTGTTGCTTCCTTGCAATCATTAAGCAACGTATTCAAATAAAGCCCTGGGAGAGTATGGCTATTTTTGCTCTGTTTCTGAATTCTGCTACAGTGTATATTAAACAAGACATAAGAAAGTAGACATATGTTTGCCAATAAATTTTGGTTGAAGAGTCCCTCTTCCCCATAGAAATTTCGTTCCAAAATGCCATACAGAATGTGAGAATTGTCTTGAATTGTGGGCTTTAGAAATTGCTCAGAAAGCTGGAGGGTCGTTCTTTTTAGTTTTAGTAATGGGTTTCATTATATTTCATACATATGCATAGTATGATGTAATTGTATTCACATCCTTCACTCTCTCTTGTCATTTTCACTCCTGCAGTTCTCCCTGCTCCTCCCAAGTAGTCCCAGACTGGTCATTCTTGCTTTGTTGCTTTGTAGAAAAAGAATAAGAGAAAAAGATAGATACTAATTTTTGAAGTTCCCATCTATGGTTTCAATTAGTCCAAATCTATTCATGAAATTTTCTTTCAG
Seq C2 exon
AATTCCAAAAACCAATATGCCTGCCTTCCAAAGCTGACACAAATACAATTTATACCAACTGTTGGGTGACTGGATGGGGCTACACGAAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109764:ENSMUST00000026907:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTATCCAGATGTGTGGC
R:
CTTGTTCCTTCGTGTAGCCCC
Band lengths:
270-1334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types