RnoINT0080218 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50170983-50172317:+
Coord C1 exon
chr16:50170983-50171158
Coord A exon
chr16:50171159-50172221
Coord C2 exon
chr16:50172222-50172317
Length
1063 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
TTCATGAAATTTTCTTTCAGAAT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GATTCCCTATCCAGACGTGTGGCGTATATATGGCGGGATTCTTAATCTGTCAGAGATTACAAACAAAACGCCTTTCTCAAGTATAAAGGAGCTTATTATTCATCAGAAATACAAAATGTCAGAAGGCAGTTACGATATTGCCTTAATAAAGCTTCAGACACCGTTGAATTATACTG
Seq A exon
GTATGCAGCGTATTTAAGGGGAAACTGTACAATTCACTTGTATTGGCGTTAGCTTCCAGTTCAATTTGAGCGAGAAGACAGATCTGCAGCAATTGTCTTTGTGTCCTGGTTGGTGGGGCTGAGGGAGAGATGAGGCTGCCTGGGAAGTAAAAACCCCACGACCTACCATGCATTTGCTGCTACTTAAGGGGGCAAAAGAGCTTCATTACTTTCTCAGAGTGCAACGGAGTGTATGGTATTGAAACAGTTGGTATAGGGAAGATTTTGACATCTGGGGACATTGGGTATCTTTTGACAAGATTGGCAGGATGACTCTTGCTTGGGCTTAGGAATATACAACTATATGAACATGAATGGGACTAGAGGTTAGTGCCTAAGAAGACACTGGGCTGACAGTGGAGGAACATGAAGAATGGAACTGCCATTGGTGGCACATCACTCCACAGAAACAGAATGCCTGCCAATACCATTAGCTGCAAGTGTCTGCTAACAGTCATGTGTCCTTAGACAGCTCGCCTTTCTTCCTTCCACCTCTAATATCCACTGTATGTGTGCTGACTACTTCATTGCTTTCTTGCAATAATTAAGCAAGATATTCAAGTAAAATACCAGGACAGCATGGCTATGTTTGCTCTGCTTCTGAATTCTGTTACAGTGTAGGTTTACCAAAGCATAAGGATGTTTACCAATACATTTTGGTTGAAGAGTCCCTCTTCCCCATGGAAATTTCATTCTGAAATGCCATTCAAACTGTGAGAATTTCCTTGAATCATGGGCTTTAGAAATGGCTGGAGGGCCATTCTTTATACTCTTTAGTTTCAGCAATGGTTTCATTATATCTCATACATGGGCATGGTATGTTTTGATTGCATGCACCCCCTTCACCCTCTCTTGCCCTTCCCACTCCTGTTGTTCGCCCTACTCCTCCCGTGTAGTCCCACATGGCTCATTCTTGCTCTGTTGCTTTGTAGAAAAAGAATAAGGCAAAAGATAGATATTAATTTTTCAGATCCCTATCTATGGTTTTAATTAGCCTAAATCTATTCATGAAATTTTCTTTCAG
Seq C2 exon
AATTCCAAAAACCAATATGCCTGCCTTCCAAAGCTGACACAAATACAATTTATACCAACTGCTGGGTGACTGGATGGGGCTACACAAAGGAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTATCCAGACGTGTGGC
R:
CTCGTTCCTTTGTGTAGCCCC
Band lengths:
270-1333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]