MmuINT0095035 @ mm9
Intron Retention
Gene
ENSMUSG00000002948 | Map2k7
Description
mitogen-activated protein kinase kinase 7 [Source:MGI Symbol;Acc:MGI:1346871]
Coordinates
chr8:4238740-4243445:+
Coord C1 exon
chr8:4238740-4239033
Coord A exon
chr8:4239034-4243303
Coord C2 exon
chr8:4243304-4243445
Length
4270 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGC
5' ss Score
5.34
3' ss Seq
CCTGGTTTTTAATTCCCCAGCCC
3' ss Score
6.89
Exon sequences
Seq C1 exon
AGTGCGCACGCGCGGCGTTATGCACGCGAGGCAGGGCGGGCACGCGCTGGGGTGGTCTAGGCAGGACGGCGGCTCGGCGGGGTCATCCGAGCGCAGGCGCAGTGCGGTGTTTGTCTACCCCGGACTGACGGGTGGCCTGGCGGTGAGCGGCGGCAGCGGCGGCGGGGAAGATGGCGGCGTCCTCCCTGGAGCAGAAGCTGTCCCGCCTGGAAGCCAAGCTGAAGCAGGAGAACCGTGAGGCCCGCAGGAGGATCGACCTCAACTTGGATATCAGCCCACAGCGGCCCAGGCCCA
Seq A exon
GTAAGCACGGCCTCGTGGGGGAGGGGCGGGCGGGGCGGGGCGCGCACTGGGAGGCCCCGCCCACCGGGCAGATCCTGCCCCCGCTTCCGGGGCGCTAGCTCTCCTCCCCTCCACTCTCTGTGCTGTCGGCTTGCAGGGAGAGGGTCACGGTGACCTGGAAGTCGGGTGGGCAGTCTCCAGGGCGACTCTCTCCGCCCACGTACCGCGGTCCCGAAGTTCACACCGTTGGTACCTGAGAGCTTAGTCCCTCACCCTGTGGTCGGCTTCCGGAGCCTTGTCACCTGCACCTTGCAGGCTTTCAGACTCGAAGCTACGCCGCTGTGACTACAACCAAGTCTTTTAACTCTGCAAACAGTTATATCTCTTCTGATTCAGTGGTTCCACTCCTGCCGAGTCAGTGACTGTCAAGAGGTCCCCTCCCCTAGCAGACAGTCCACACACGTGCATGCCTATCTGCCCATGTAGGTCACTAAGTCCTCATCTACATCCGTTTTGATTGGAGGCTTCTATTTGACTTCTTTGGTCATATCAGATGGCTCCTTCTAAGCTTGGAAGGACCTTGTCACTGGACCCAGCTCACTGCCTCCTACATACAGGGGCACCTCATATCTCTAATGACCAACTACTTTTCACTATTGCTGTCTAGCCCTCAGGAAACACATAGCCATCTCTCAGCCTGGCAGCCTTTGTCTACAGGGCTCAAGTGACTGCTACTACTACAGACACCTGTAACCAGTGTAGTCCCATCGAGTAGAAACGCACCTCCTTTCTGAGCCTACTGTCTTTGGGCCTGCCTCCTGACATACGGTCCTGTACCAAAAGTGCTTCCTCTTCCTTTCTAGACACACATCCAGCTTGTCCACCATGACCACAGTTAGCATCCTTGTTGTATCCCAGATACCCCTGTCCCAAGTTGTCTTTGCTGAAAGAATCTGGCTTTTTTTCTCCCCTCTCTGTCCAACCCTTCCTCTGTCCCTCTTGATTCAGCAGAATGTCTTCTTTATATCCTCTGTGATGTAATCTTTGGAGTATACATACTATAGTTGTCTGTGTGGTCACTATGGTAAGAGGGGAAAGGCAGCCTCCTGTAGGTGAAAATTCTGTTCACTACCTGGCCACCTGGCCTGACTGACCTTCACAGCTTGATCATCTTCCTGAAGAGGCATTCAGGATTCCCTCCATCCCTACCCCTTCTGGACAAAGTCTTCCACGTTTCCTTCCTGGGAGTTTCTTCCAGGAACTGGAGATACCCAGAGGTGGGGATGCATTTCACTGATTCTGCCTGGGACCAGAGGTTGGGCCCCTGCTGGATTCCAGGGCCATCCCTCCACGGCCCTGTGGATGAGACAGGGTTGGGAATAGGGTTCTAGGTGCCATAAGAGCTGCCTGTCCCTAGAGCAGAGTAAGACCTGGTAAGGCTAGTGGCTGGCAGGCCCCAAGGAGTCCCCTGCAGGTGTCTGTCTCTGTCAGCTCCACACCTTCCTGCCATCATCCCATCTCTGTTGGTTTCTACCCATCTCTGCAGTTTGGTGCCTTGTGCCTCCCCCTCCTCTTCATTATGATTTGATTTCTTTTCTGTTGGACAAATCGGTTGTTTCTGTTGTGATTTATTGTGGTGTTTTTTTTTTTCTCTTTTCTTCCTTTCCCCATCCAGTTATTGTGATCACTCTAAGCCCTGCTCCTGCCCCGTCCCAGCGAGCAGGTACCAGCCTTTTTATCATTGCTGCTTGCATATCTGCACATTGACCTAACCGCTGCCCCAGCTGCAGAATGCCATCCCTACCCTATGCTGTATGTGGGTGTGTGGGTGTATTTGTGTGTGTGTATAACTTAGGGAGAGAGAGAAGGAAAGAGAGTTCTGTGTCTTCATTTTCACTCTCCCTTAACTACAGAAATGTGAGCCTGGCTATACTTTCTCTGTGTCCATTAGTCTTCTCATTTCTTCTCTGGCTCAATCTGGAATCCTAGAAGATGAAATGAGCTCCCTTAATGAGCAGGAGTCTGCTAAGTGGGCACACAATGATGTGTGTGTGTGTATAAATAAAGTAGGTAGAGATAGGTGCACTGCTCTTATTTAATCTGTCTCAACTATGAAGTGAATGAGTGTCATTATTTGTGTACTGTGTCTCCTTTCAGAACCAGGAACCTAGCAGTAAGTAAAACAGATCAAGCTCCTATCCTGTGGGGCTGAGGATGCAGGATGGACGGGATCCATTAGTGGTCACGAAGCATGTGTCTGATCCAGCAGAATAGTCTAGTAGGGTCTCTGCAGAGGGGTCTCTCAGGGAAAGCCTATGGAGGATACAGGGTTTGAACAAAAGTATACCAAGAGGTTAGGGGAAACAAGACCTCCCCCCTCCACCCCTTCCTCCAACCTAAGGTCTCCAATGCTAGGTAGATCAGCTGTGCTAGTTCCTAGGTGTGTAATGTCCTGTGTGTGTAAGAGAGCACCTGTGTTGATAGAAATGAGAAGAGCTCACTATTGGTGCTAGTGTGTCCCAGCTTGTGTGTATACATGGATGCGTGTATGTGTGCTGTATGTACATGTTTGTCTTTTTGCACATGAGTGTATGTATGTTGGGCTGGTAGCCTGCACACATATGGATCCCATAAGTGGGTACATGTCTCCATGGTCTGTCTTGCTTTCTCTCATTCATTCAATCATTCTCACTTTGTTTTCCTTCACTGACTTATACTTAATCTACTTTCTAGGCCTGCCGTGTGGCTCTAAACCCCTCTAACTTCTGTTCTCAGGGCTTTTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCCCCCCTTTTCCACCAAATCCATGCTTCAGAGAGTGGGGCCAGCAGCCTTTTCCCTGGATCTGGAGCAACCCAAGAGGGCTTGATGGTCTGTGTGGGTCAGGGGACTGGCAGGGAGTACAGAGGTTAGAGGTGTGGTCACTCCAGAGAGCTGAGTTGCCAGACAAAGAAGGATCACACATGTACTCATGGACGTGAGCTGTGGACAGTTCCTAGTGAGTCTGGATACAGTTGGGCCCCAACTACCAGAACTAGAAAAGACCTGGATATCTGCAGTAAAAGCCCATTTGTCTCTGACCATTAATTGCTGGGCCCAAGTTACTAAACGCCATTAGAGGGACTGTGGGAAGAGACGGTAGTAAAGATAAGGGTGGAGAGGTGTGTTAGAAAGTGGCAGGCTCCAGGCCTTCTGCGAAGTGATGCTTGAAGGGTGCTTGTTGCTGTCCTGAGCTGAGCTAGCCTCCGGGAGCCTTGGGACCCTTGAAGTATGAGAGGTTCATGGAGAGCAGATGCTTCCATGTACAAGGGGGCTCACGGCCCCTGCCTCTAGGCCAGAGAGACCCCCTAGCTCTTCAAGGAATGTCCTCTTAATGTCTCATATCCTCTCTGGCTGTCTCTGCAGCACCTCCTCTGGGCAGCTGGGTCCCAAGTCTTGGCTCCTCCTGTCTGTCTTTCTCCTGTCATCCCTCACCCTAACACTACCCGCCCGTCCTGGGGTGCCTGCTGCCTGCCTGCTATCTGCCTGTAGCATGCCCGAGCTGTCCGCATGCAGGCCATTGGGAAGTACCAAGCTCCCCTCCCTGGCCCAGCATTTCCCCCCTGGCCAGCCCAGCTAGCCCCTGGAAGAGCTTTGCCAATTAGATCACCATCGATCTCTCTTCACAAGAAATCAAGCTTACCCTGGGGTTCTGTTCCCGATCCCTTGACCCCAGCTCTGCAGGCCTGGCTGGGAGGTGCACAGATGAGACAGCTGGACAGAAGGTGGCCCTCCCTGGCCTAGGAGTCTAATCTAGGGCAAGACAGCCTGAAACCAGAGTTCCATAGCTCTTGGCTCTTGTCATCCACAGTGTAGTGTTGGTGGCCAGGCCAGGTTCTTGATGGGCATTCTGTCCTCACACATTCCCCATGTGAGCACTGCGGCCCTGGGCTGCTTCCTGGCACTGAGAGGGAACAGAGAGCTCTGCCAGGGAAGCTCCCTGGCAGAGACCCCTCACTTCTCTGCAGTATGTACTTGAGGATAAGCCCTCAGCCTGTGGGACTACCCCTCTCCCACCAGGCCACCCCATCTCCTTTCAGGTCAGAGGGGCAGGAGGAAGGACCCTGAAGATGCCCAGGGGGTGGGGAAGAAGGCCCTAGCCAGCAGAGCAGGGGACTGTTCCAGCTTGGCCGAAGGGATACCAGGAAGGGGAAGATGAGAACGCCGAGTCCTTGGTGGCCAGCTAGATGCTAACTCCTTTCATGCCCCTGGTTTTTAATTCCCCAG
Seq C2 exon
CCCTGCAACTCCCACTGGCCAACGATGGGGGCAGCCGCTCACCATCCTCAGAGAGCTCCCCACAGCACCCTACACCCCCCACCCGGCCCCGCCACATGCTGGGGCTCCCATCAACCTTGTTCACACCGCGCAGTATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002948-Map2k7:NM_011944:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: