MmuINT0097671 @ mm10
Intron Retention
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154265660-154266262:+
Coord C1 exon
chr4:154265660-154265788
Coord A exon
chr4:154265789-154266133
Coord C2 exon
chr4:154266134-154266262
Length
345 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TTCTGCTTTCTGGGCCTCAGCCT
3' ss Score
4.85
Exon sequences
Seq C1 exon
CTTGCCCACCTCTCACCTTTGGGCTTAACTGCAGCCAGATTTGTACCTGTTTCAATGGGGCCTCTTGCGACCCTGTCCTTGGGCAGTGCCACTGTGCTCCTGGCTGGATGGGACCCACCTGCCTGCAGG
Seq A exon
GTAAGCCATGTGTAGGAGCTCAGGGTCCAGTCCTGGGTAATGGCCTCTCGGTGGGTCCATGGAGGGACATGTGTGCATGGGATTAGAGGGTAGGTACATTGCTCATCTGTCAGCATGGCCTTTCAGGGAAGTTGGAAAGGAGCTTGACTGTGGCCTTTAGTGTCATGCCCCTAAGGCCAGATTGGTGGGTCCAGGATAGGCCTGGGCTCTGGCATCATAGAACCAGCCTGGTGAGGTTCCAACTTGAAAGTCAGGTTGAGCTCTGGGATTATGTGGAAACTTAAGGAACTCCAAAGGCCTCTGCTGGCCAGATGCTGAGGTTTGCTTCTGCTTTCTGGGCCTCAG
Seq C2 exon
CCTGCCCTGCTGGCCTGTATGGCAAGAACTGTCAGCATTCCTGTCTCTGCCGAAATGGAGGGAACTGTGACCCCATCTTGGGCCAGTGCACGTGCCCAGAGGGTTGGACCGGCTTGGCCTGTGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751:ENSMUST00000030897:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCCACCTCTCACCTTTG
R:
CGTTCTCACAGGCCAAGC
Band lengths:
258-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types